Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq1599 129 1e-24 seq1210 116 8e-21 seq3213 114 3e-20 seq4120 105 2e-17 seq95 104 5e-17 seq179 100 7e-16 seq2330 91.5 3e-13 seq126 86.0 1e-11 seq1535 84.2 5e-11 seq1094 84.2 5e-11 seq373 84.2 5e-11 >seq1599 Length=3738065 Score = 129 bits (142), Expect = 1e-24 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 133911 ATAATCCTGATTCTCGACGTCATATTCTAACTGCATGGAATGTTGGTGAACTAGATAAAA 133970 ||||||||||||||||||| |||| | | ||| |||||||||||||| || || || | Sbjct 2426401 ATAATCCTGATTCTCGACGAATTATTGTGAGTGCCTGGAATGTTGGTGACCTGGAAAACA 2426460 Query 133971 TGACTTTGCCACCATGTCATTGCTTTAGTCAATTCTTCGTAAATGACGGTAAGTTATCAT 134030 ||| |||||| ||||||||| ||| || || | ||| ||| || |||| | Sbjct 2426461 TGAATTTGCCGCCATGTCATACTTTTTTCCAGTTTTACGTGGCTGATGGCCGGTTAAGTT 2426520 Query 134031 GTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAACATTGCTTCAT 134090 ||||||||||| ||| |||| | || || || || || |||||||||||||| | Sbjct 2426521 TGCAGCTATATCAACGAAGCGCTGATATTTTTTTGGGTGTGCCGTTCAACATTGCTTCTT 2426580 Query 134091 ATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAGTTGGTGAGTTTGTA 134149 || |||| || || ||| | || || ||| ||| || || | |||||| || ||| Sbjct 2426581 ATGCATTGTTATTACAGATGATGGCGCAGGTTACTGGTTTGGAGGCTGGTGATTTCGTA 2426639 >seq1210 Length=1188399 Score = 116 bits (128), Expect = 8e-21 Identities = 261/388 (67%), Gaps = 8/388 (2%) Strand=Plus/Plus Query 150404 GGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAAT 150463 ||||||||||| |||||||||||| |||| || || ||||| || || || | Sbjct 213490 GGTGAACCAGGGGTTGGTAAAACAGCTATCGCAGAAGGTTTAGCTCATCGTATTATACGT 213549 Query 150464 GGTGATGTTCCAGATTCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTT 150523 ||||||||||| || | ||||| |||| | ||||| |||||||||| | Sbjct 213550 GGTGATGTTCCGGAGAATCTGAAAACAAAACAAATATTCTCTTTAGATATGGGTGCTCTG 213609 Query 150524 ACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAA 150583 | || || | |||||| || || || ||||||||| || | | | || | || Sbjct 213610 ATAGCCGGAGCGAAGTATAAAGGAGAGTTTGAAGAACGTTTAAAATCTGTAGTAAATGAG 213669 Query 150584 CTAAAAGAACGCGATGATG---TTATTCTGTTCATCGATGAAATCCATACTATTA-TGGG 150639 ||| | |||| | | ||| |||| || ||||| |||||||| |||| | || Sbjct 213670 GTAACTCAGTCAGATGGAGAGATCATTTTGTTTATTGATGAGATCCATAC-ATTAGTTGG 213728 Query 150640 TGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATC 150699 ||| ||| || || ||| | || ||||| |||||| |||||||| ||| | | Sbjct 213729 TGCAGGTAAGAGTGACGGAG---CTATGGATGCCGCCAATATTTTAAAACCGGCTTTGGC 213785 Query 150700 TCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGA 150759 ||| |||||| | ||| || ||||| || || | || || |||| || | |||| Sbjct 213786 TCGTGGTGAATTACGTTCTATTGGTGCTACTACGTTAGACGAGTATCAGAAGTATTTTGA 213845 Query 150760 AAAAGATGCAGCACTACAGCGTCGTTTC 150787 ||||||| ||| || | ||||||||| Sbjct 213846 AAAAGATAAAGCTCTTGAACGTCGTTTC 213873 >seq3213 Length=2170589 Score = 114 bits (126), Expect = 3e-20 Identities = 262/393 (67%), Gaps = 6/393 (2%) Strand=Plus/Plus Query 150398 TTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATC 150457 ||| |||| |||||||||||||||||||| ||| ||||| ||| | || ||||| || Sbjct 1169408 TTAATTGGAGAACCAGGTGTTGGTAAAACGGCAATTGTTGAAGGACTTGCTCAACGTATT 1169467 Query 150458 GCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGT 150517 | | |||||||| || || | ||||||||| || | |||| | |||||||| Sbjct 1169468 GTTCGCGGTGATGTGCCTGAGAGCTTAAAAGATGTTAAATTGATTTCACTTGATATGGGT 1169527 Query 150518 GCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCTA 150577 ||| | | || ||| | || | | |||||||| |||||||| || | | | || Sbjct 1169528 GCACTAATCGCAGGTGCAAAATTCAGAGGTGAATTTGAAGAACGGTTAAAGGCTGTTTTA 1169587 Query 150578 CAAGAACTAAAAGA---ACGCGATGATGTTATTCTGTTCATCGATGAAATCCATACTATT 150634 ||||| | |||| | || ||| | || ||||||| ||||| | ||||| || Sbjct 1169588 AAAGAAGTTGAAGAATCAAACGGTGAAATAGTTATGTTCATTGATGAGCTTCATACAGTT 1169647 Query 150635 ATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCT 150694 | || || ||||| | | ||| || ||||| | || | |||||||| Sbjct 1169648 GTAGGCGCAGGTGCTTCAGAAGGC---TCGATGGATGCAGGTAACCTTTTAAAACCAATG 1169704 Query 150695 CTATCTCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACAC 150754 || | | || | |||| || ||||| |||||| |||||||||| ||| | Sbjct 1169705 CTTGCAAGAGGAGTCCTTCGAACTATAGGTGCTACAACCATTAATGAATATCGAAAATAT 1169764 Query 150755 ATTGAAAAAGATGCAGCACTACAGCGTCGTTTC 150787 ||||||||||| | ||| | ||||| | ||| Sbjct 1169765 ATTGAAAAAGACCCTGCATTGGAGCGTAGATTC 1169797 >seq4120 Length=297970 Score = 105 bits (116), Expect = 2e-17 Identities = 260/391 (66%), Gaps = 10/391 (3%) Strand=Plus/Plus Query 150402 TTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTA 150461 |||||||||| ||| |||||||| || || || || || || || || || Sbjct 260269 TTGGTGAACCCGGTACAGGTAAAACCGCTATTGTCGAGGGCTTGGCTCATCGTATTCTGC 260328 Query 150462 ATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCAT 150521 |||||||||||| || | |||||||| | || ||| || ||||||| ||| Sbjct 260329 GTGGTGATGTTCCTGAAAATCTGAAAGATAAGCAGATCTATTCACTGGATATGGGAGCAC 260388 Query 150522 TTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACA 150579 | | ||| ||| | |||||| || || || || ||||| || || | | || | Sbjct 260389 TGATTGCCGGTGCCAAGTATAAAGGAGAGTTTGAGGAACGCTTGAAGTC--TGTGATTTC 260446 Query 150580 AGAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTAT 150636 || || | || ||| | || | || ||||| || |||||||||||||| | | Sbjct 260447 TGAGGTACAGAAATCCGAAGGGCATATCATCCTGTTTATTGATGAAATCCATACACTGGT 260506 Query 150637 GGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCT 150696 |||||||||| | |||| ||| | ||||| | ||| || |||| ||||| | Sbjct 260507 GGGTGCTGGTAAG---GGCGAAGGTGCAATGGATGCGGCCAACATTCTAAAGCCTGCGTT 260563 Query 150697 ATCTCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACAT 150756 | || |||||| | || |||||||||||| |||| |||||||| | || | | Sbjct 260564 GGCACGTGGTGAATTACGCTCCATCGGTGCAACCACCTTAGATGAATACCAAAAGTATTT 260623 Query 150757 TGAAAAAGATGCAGCACTACAGCGTCGTTTC 150787 ||| ||||| |||||| | || |||||| Sbjct 260624 TGAGAAAGACAAAGCACTCGAACGCCGTTTC 260654 >seq95 Length=1800565 Score = 104 bits (114), Expect = 5e-17 Identities = 282/420 (67%), Gaps = 14/420 (3%) Strand=Plus/Minus Query 150398 TTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATC 150457 ||||| ||||| |||| ||||||||||| || || || || ||||| | || || Sbjct 1539261 TTAGTAGGTGAGGCAGGCGTTGGTAAAACGGCTATTGTGGAAGGTCTAGCAAAGCGTATT 1539202 Query 150458 GCTAATGGTGATGTTCCAGATTCTA-TGAAAGAT---GTTGAAATTCTTTCTTTGAATAT 150513 | | |||| | || ||||| ||| | |||||| ||| | || || | ||| || | Sbjct 1539201 GTTGATGGGCAAGTACCAGA-ACTATTAAAAGATAGCGTT--ATTTATTCCCTTG-ATCT 1539146 Query 150514 GGGTGCATTTACT-GCTGGTACTAAGTATCGTGGTGAATTCGAAGAACG-TGTAGA-CAA 150570 || || |||| | || ||||| || || |||||||| || || |||| | || | | Sbjct 1539145 TGGCGC-TTTATTGGCAGGTACCAAATACCGTGGTGATTTTGAGAAACGCTTTAAAGCCG 1539087 Query 150571 TTTGCTACAAGAACTAAAAGAACGCGATGATGTTATTCTGTTCATCGATGAAATCCATAC 150630 ||| || |||| |||||| | || ||| ||| | || || |||||||| ||||| Sbjct 1539086 TTT--TAAAAGACCTAAAAAAGCGTACCAATGCGATTTTATTTATTGATGAAATACATAC 1539029 Query 150631 TATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACC 150690 ||||| ||||| || || ||| |||||| || ||||| ||| | |||||||| Sbjct 1539028 CATTATCGGTGCAGGCGCTACTACTGGCGGTGCTATGGATGCTTCAAATTTATTAAAACC 1538969 Query 150691 TGCTCTATCTCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAA 150750 || || | ||| |||| ||| | || | || || | | ||||||||| Sbjct 1538968 AGCCCTTAGCAGTGGTCAAATCCGTTGTGTAGGCTCTACCACATTTAAAGAATATCGTGG 1538909 Query 150751 ACACATTGAAAAAGATGCAGCACTACAGCGTCGTTTCATGAAGGTTGATATTGTTGAACC 150810 |||| |||||| || || |||||||||| ||| || ||| | |||||||| Sbjct 1538908 TATTTTTGATAAAGATCACGCCTTATCGCGTCGTTTCCAGAAAGTGGATGTGGTTGAACC 1538849 >seq179 Length=2312354 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 133907 AAAAATAATCCTGATTCTCGACGTCATATTCTAACTGCATGGAATGTTGGTGAACTAGAT 133966 ||||| ||||||||||| || | ||| | | |||||||||||||| ||| | ||| Sbjct 182453 AAAAAAAATCCTGATTCAAGAAGATTGATTGTTAGTGCATGGAATGTTGCTGATGTGGAT 182512 Query 133967 AAAATGACTTTGCCACCATGTCATTGCTTTAGTCAATTCTTCGTAAATGACGGTAAGTTA 134026 |||||| ||||||| ||||| || || ||| || | ||| ||||| || ||| Sbjct 182513 AAAATGGCTTTGCCTCCATGCCACACAATTTTTCAGTTTTATGTATCCGACGGAAAATTA 182572 Query 134027 TCATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAACATTGCT 134086 ||||| || |||||||| || ||||| || | ||||| || || || ||||| Sbjct 182573 TCATGCCAACTTTATCAACGAAGTGCCGATCTTTTTCTGGGAGTCCCTTTTAATATTGCA 182632 Query 134087 TCATATTCATTACTAACTCATATGTTAGCACAAGT 134121 |||||| || | || || ||| | ||||| || Sbjct 182633 TCATATGCACTCCTTACAATGATGGTGGCACAGGT 182667 >seq2330 Length=1066040 Score = 91.5 bits (100), Expect = 3e-13 Identities = 194/280 (69%), Gaps = 25/280 (9%) Strand=Plus/Minus Query 150527 GCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGA--CAATTTGCTACAAGAA- 150583 || || || || || |||||| |||| ||||||||| | | | || | || ||| Sbjct 194598 GCAGGAACAAAATACCGTGGTCAATTTGAAGAACGTATTAAAGCGATATTGAAC--GAAT 194541 Query 150584 ---CTAAAAGAACGCGATGATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGT 150640 |||||| || ||| || ||||||||| || || || || ||||| || | || Sbjct 194540 TGTCTAAAA--ACCCGAACAT--TATTCTGTTTATAGACGAGATACATACCATAGTAGGC 194485 Query 150641 GC---TGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAAT-ATGTTAAAACCTGCTCT 150696 || |||||| || || || ||||| ||||| ||| | ||||| ||| | Sbjct 194484 GCAGGTGGTGCAACAGGA------TCACTGGATGC-AGCAAACATGCTGAAACCGGCTTT 194432 Query 150697 ATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACA 150755 |||| |||||||| | ||| |||||||||||||| |||||||||||| ||| ||| Sbjct 194431 GGCTCGTGGTGAAATACAATGT-ATCGGTGCAACAACACTCGATGAATATCGCAAAAACA 194373 Query 150756 TTGAAAAAGATGCAGCACTACAGCGTCGTTTCATGAAGGT 150795 |||||||||| | ||| | | || |||||| ||| || Sbjct 194372 TTGAAAAAGACGGAGCTTTGGAACGCCGTTTCCAGAAAGT 194333 >seq126 Length=3533043 Score = 86.0 bits (94), Expect = 1e-11 Identities = 189/281 (67%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 133869 GAACTATCGACCAGCTTGAAGTACTTATTGATGGATTGAAAAATAATCCTGATTCTCGAC 133928 |||| ||||||||| | | | || || || | | ||||||||||| |||||||| | Sbjct 1886910 GAACGATCGACCAGATCACCGAAGTTGTTAATACAATAAAAAATAATCCGGATTCTCGGC 1886969 Query 133929 GTCATATTCTAACTGCATGGAATGTTGGTGAACTAGATAAAATGACTTTGCCACCATGTC 133988 || ||| | | ||||||||| |||| || | || |||| | || || |||| Sbjct 1886970 GTATCATTGTCAGTGCATGGAACGTTGCCGATATTCCCAATATGAAACTCCCTCCCTGTC 1887029 Query 133989 ATTGCTTTAGTCAATTCTTCGTAAATGACGGTAAGTTATC-ATGTATTCTATATCAACGT 134047 |||| || ||||||| || |||| || |||| || | || ||||||||| Sbjct 1887030 ATTGTTTCTTCCAATTCTATGTGGCAAACGGAAAACTATCTCTGCA-ACTTTATCAACGT 1887088 Query 134048 AGCTGTGATCTATTCTTAGGAGTACCATTCAACATTGCTTCATATTCATTACTAACTCAT 134107 ||| ||| |||| | ||||| || || || || || || ||| | ||| | || Sbjct 1887089 AGCGCCGATATATTTCTTGGAGTTCCTTTTAATATAGCATCGTATGCTTTATTGTTGCAA 1887148 Query 134108 ATGTTAGCACAAGTTTGTGGGTTAGAAGTTGGTGAGTTTGT 134148 ||| | ||||||||| || | |||| ||||| ||||| Sbjct 1887149 ATGATGGCACAAGTTACAGGACTGGAAGCAGGTGATTTTGT 1887189 >seq1535 Length=1988416 Score = 84.2 bits (92), Expect = 5e-11 Identities = 172/251 (69%), Gaps = 11/251 (4%) Strand=Plus/Minus Query 150588 AAGAACGCGATGATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTG 150647 ||||| ||| || |||| | || || ||||| || ||||| || | || || || Sbjct 1372950 AAGAATCCGA--ATATTATCTTATTTATTGATGAGATACATACGCTTGTCGGAGCCGGAT 1372893 Query 150648 CGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTG 150707 | || ||| |||| ||||| | ||||||||| |||||||| | | | |||| Sbjct 1372892 CTGCTT-CGG--GTTCGATGGATGCGGCCAATATGTTGAAACCTGCGTTGGCAAGAGGTG 1372836 Query 150708 AAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATG 150767 || | | ||||||||||||||| | ||||| || || ||| | ||||| ||||| | Sbjct 1372835 AATTGCAATGCATCGGTGCAACAACATTGGATGAGTACCGGAAAAATATTGAGAAAGACG 1372776 Query 150768 CAGCACTACAGCGTCGTTTCATGAAGGTTGATATTGTTGAACCGACA---CTTGAAGAAA 150824 ||| | | |||||||| ||||| |||||||| |||||| |||||||| Sbjct 1372775 GAGCTTTGGAACGTCGTTTTCAAAAGGT---GATTGTTGATCCGACAACCGCTGAAGAAA 1372719 Query 150825 CTCGCCAGATT 150835 | | |||||| Sbjct 1372718 CGCTTCAGATT 1372708 >seq1094 Length=2708314 Score = 84.2 bits (92), Expect = 5e-11 Identities = 169/242 (70%), Gaps = 13/242 (5%) Strand=Plus/Minus Query 150588 AAGAACGCGATGATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTG 150647 |||||| | | ||||||| | || || ||||| | || ||||| | ||||| ||| Sbjct 953620 AAGAACCCTA--ATGTTATCTTATTTATAGATGAGCTTCACACTATAGTAGGTGCAGGTT 953563 Query 150648 CGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTG 150707 | ||| ||| | ||| ||||| ||||||| | ||||||||| || | || || | Sbjct 953562 CTGCTG-CGG--GATCTATGGATGCTGCCAATATGCTTAAACCTGCTTTAGCGCGTGGAG 953506 Query 150708 AAATTCG-TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGAT 150766 |||| | ||| || |||||||| || || ||||| | || | || ||||||||| Sbjct 953505 AAATACAATGT-ATTGGTGCAACTACACTTGACGAATACAGAAAGAATATCGAAAAAGAT 953447 Query 150767 GCAGCACTACAGCGTCGTTTCATGAAGGTTGATATTGTTGAACCGAC-ACTT--GAAGAA 150823 | || | ||||||||||| ||| || || |||||||| || |||| |||||| Sbjct 953446 GGTGCTTTGGAGCGTCGTTTCCAGAAAGT---CATGGTTGAACCTACAACTTCGGAAGAA 953390 Query 150824 AC 150825 || Sbjct 953389 AC 953388 >seq373 Length=1274844 Score = 84.2 bits (92), Expect = 5e-11 Identities = 198/293 (68%), Gaps = 7/293 (2%) Strand=Plus/Plus Query 133902 GATTGAAAAATAATCCTGATTCTCGACGTCATATTCTAACTGCATGGAATGTTGGTGAAC 133961 |||| || | |||||||||||| || ||| ||| | | || ||||| || | Sbjct 929325 GATT-AACACTAATCCTGATTCGCGGCGTTTGATTGTCTCAGCTTGGAACCCTGCATTAG 929383 Query 133962 TAGATAAAATGACTTTGCCACCATGTCATTGCTTTAGT-CAATTCTTCGTAAATGACGGT 134020 ||||| ||||| | | ||||| || || ||| ||| | ||||| | || || || Sbjct 929384 TAGATGAAATGGCACTACCACCTTGCCA-TGCCTTATTCCAATTTTATGTGGCAGATGGA 929442 Query 134021 AAGTTATCATGTATTCTATATCAACGT--AGCTGTGATCTATTCTTAGGAGTACCATTCA 134078 || |||||||| ||||||| ||| ||| |||| | ||| | || || || || | Sbjct 929443 AAACTATCATGTCAGTTATATCAGCGTTCAGC--TGATATTTTCCTTGGTGTTCCCTTTA 929500 Query 134079 ACATTGCTTCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAGTTG 134138 | |||||| ||| ||||| | || ||| | || ||||||||| |||| | | Sbjct 929501 ATATTGCTAGTTATGCATTATTGACGATGATGGTGGCGCAAGTTTGTAATTTAGGGTTAG 929560 Query 134139 GTGAGTTTGTATGGATGGGTGGAGATGTTCACATTTATAAAAATCACGTAGAA 134191 |||| ||| | |||| |||||| ||| ||| | |||| ||||| ||||| Sbjct 929561 GTGATTTTATTTGGACGGGTGGTGATAGCCACTTATATAGTAATCATCTAGAA 929613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147225870778416