Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq1615 96.9 6e-15 seq9935 89.7 9e-13 seq95 89.7 9e-13 >seq1615 Length=177996 Score = 96.9 bits (106), Expect = 6e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 ||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| Sbjct 170780 GCGGGGTGGAGCAGTCCGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCAAAT 170721 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 170720 CCTGCCCCCGCAACCA 170705 >seq9935 Length=12840 Score = 89.7 bits (98), Expect = 9e-13 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 68693 GATGGG-GCATAGCTCAGG-GGTTAGAGCGCGCGCTTGATAAGCGTGAGGCCGTTGGTTC 68750 |||||| |||||||||||| ||||||||||| ||| |||||||||||||| || |||||| Sbjct 5752 GATGGGCGCATAGCTCAGGTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTC 5693 Query 68751 GAGACCAACTGTCCCTACCAAAC 68773 ||| ||| ||| || |||| || Sbjct 5692 GAGTCCACTTGTGCCCACCATAC 5670 >seq95 Length=1800565 Score = 89.7 bits (98), Expect = 9e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 132957 TTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGT 133016 ||||| |||||||||||||| |||||||||| ||||||||||| ||||||| ||| Sbjct 1408315 TTTGACGCGGGGTGGAGCAGCTTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTTGGT 1408256 Query 133017 TCAAATCCCTCCCCCGCATCCA 133038 |||||||| |||||||| ||| Sbjct 1408255 TCAAATCCAGCCCCCGCAACCA 1408234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895488801992640