Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq9935 87.8 3e-12 seq1690 86.0 9e-12 seq21293 84.2 3e-11 seq1601 84.2 3e-11 >seq9935 Length=12840 Score = 87.8 bits (96), Expect = 3e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 52207 GCATAGCTCAGG-GGTCAGAGCGCGCGCTTGATAAGCGTGAGGTCGGTGGTTCGAGACCA 52265 |||||||||||| ||| ||||||| ||| ||||||||||||||||||||||||||| ||| Sbjct 5745 GCATAGCTCAGGTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCA 5686 Query 52266 CCTGTCACTACCA 52278 | ||| | |||| Sbjct 5685 CTTGTGCCCACCA 5673 >seq1690 Length=1574822 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 49994 CATCGGGGTGTAGCTCAGTCGGTAGAGCGCTCGGTTCGGGACCGAGAGGCCGTGGGTTCG 50053 || || |||||||| ||| ||||| |||| ||||| ||||||| ||||||||||||||| Sbjct 521482 CAACGAGGTGTAGCGCAGGTGGTAGCGCGCACGGTTAGGGACCGTGAGGCCGTGGGTTCG 521541 Query 50054 AGTCCCGCCACCCAGACCAA 50073 | ||||||||| |||||| Sbjct 521542 AATCCCGCCACTTCGACCAA 521561 Score = 86.0 bits (94), Expect = 9e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 49997 CGGGGTGTAGCTCAGTCGGTAGAGCGCTCGGTTCGGGACCGAGAGGCCGTGGGTTCGAGT 50056 || |||||||| ||| ||||| |||| ||||||||||| |||||||||||||||||| Sbjct 1295679 CGAGGTGTAGCGCAGGTGGTAGCGCGCATGGTTCGGGACCATGAGGCCGTGGGTTCGAGT 1295620 Query 50057 CCCGCCACCCAGACCAA 50073 |||||||| |||||| Sbjct 1295619 CCCGCCACTTCGACCAA 1295603 >seq21293 Length=1177 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/63 (90%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 52208 CATAGCTCAGG-GGTCAGAGCGCGCGCTTGATAAGCGTGAGGTCGGTGGTTCGAGACCAC 52266 ||||||||||| ||| ||||||| ||| ||||||||||||||||||||||||||| |||| Sbjct 635 CATAGCTCAGGTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCAC 576 Query 52267 CTG 52269 || Sbjct 575 TTG 573 >seq1601 Length=193913 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/63 (90%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 52208 CATAGCTCAGG-GGTCAGAGCGCGCGCTTGATAAGCGTGAGGTCGGTGGTTCGAGACCAC 52266 ||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||| |||| Sbjct 147002 CATAGCTCAGGTGGTTAGAGCGCGCGCCTGATAAGCGCGAGGTCGGTGGTTCGAGTCCAC 147061 Query 52267 CTG 52269 || Sbjct 147062 TTG 147064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715554181017600