Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq1599 102 5e-17 seq1948 84.2 1e-11 >seq1599 Length=3738065 Score = 102 bits (112), Expect = 5e-17 Identities = 183/267 (69%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 78354 ACTTGCGGTATATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCT 78413 || ||| ||||||||| || | |||||| ||||| | ||| || | ||| || || Sbjct 2426686 ACCTGCTCTATATGATTACAATACACATGAGCATCACCTAATGTATGTACGAAATCACCA 2426627 Query 78414 ACTTCCAGTCCGCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTA 78473 | |||| || | ||||| || || ||| | ||||| || ||||||||||| Sbjct 2426626 GCCTCCAAACCAGTAACCTGCGCCATCATCTGTAATAACAATGCATAAGAAGCAATGTTG 2426567 Query 78474 AATGGAATTCCTAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCA 78533 || || | || || || | ||| |||||||||| || | || |||||| | ||| Sbjct 2426566 AACGGCACACCCAAAAAAATATCAGCGCTTCGTTGATATAGCTGCAAACTTAACCGGCCA 2426507 Query 78534 TCAACTGATACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAG 78593 ||| | |||||||||||||| | ||| ||||| ||||| | ||| | || | | Sbjct 2426506 TCA---GCCACGTAAAACTGGAAAAAAGTATGACATGGCGGCAAATTCATGTTTTCCAGG 2426450 Query 78594 TCAGCAGGATTCCAAGCAGACACAATA 78620 ||| || |||||| ||| ||||||| Sbjct 2426449 TCACCAACATTCCAGGCACTCACAATA 2426423 >seq1948 Length=475166 Score = 84.2 bits (92), Expect = 1e-11 Identities = 161/237 (68%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 78375 TAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGTCCGCACAAATGC 78434 ||||| || || || || | ||| |||| ||||||||| ||| | ||| | || Sbjct 215830 TAAATGTGTGCATCTCCTAGTGTATGAACGAAGTCTCCGGCTTTTAAACCGGTAACCTGA 215771 Query 78435 GCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATTCCTAAGAATACG 78494 || || || ||| |||||| || ||||| || ||||||||||| | ||| | |||| Sbjct 215770 GCCATCATTTGTAAAAGTAAAGCATATGACGCTATGTTAAATGGCACTCCCAGAAATATA 215711 Query 78495 TCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGATACGTAAAACTGG 78554 ||| | || ||||| || ||||| | |||| ||||| || || || || ||| Sbjct 215710 TCAGCACTGCGTTGATATAATTGTAAGCTTAATCGTCCAT---TTGCCACATAGAATTGG 215654 Query 78555 AATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAGTCAGCAGGATTCCAAGCA 78611 || | || ||||| || |||| ||| | || | |||| | |||||||||| Sbjct 215653 AAAAAAGCATGACATGGAGGTAAATTCATGTTTTCCAGGTCACCCACATTCCAAGCA 215597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300069305905600