Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_019526.1 Length=345809 Score E Sequences producing significant alignments: (Bits) Value seq3436 118 2e-21 seq2330 111 3e-19 seq3213 109 1e-18 seq95 102 2e-16 seq179 91.5 3e-13 seq875 86.0 1e-11 >seq3436 Length=2346199 Score = 118 bits (130), Expect = 2e-21 Identities = 186/261 (71%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 48477 TCTGCTGTAACTGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATT 48536 |||| |||| ||||| || ||||| ||||| | || ||||||||||| | |||| Sbjct 1623022 TCTGTTGTA---GCTGGCACTAAATATCGTGGACAGTTTGAAGAACGTATCAGATCTATT 1623078 Query 48537 ATTAAAGAACTTAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATG 48596 |||| || || ||||| ||||||||| || || |||||||| |||||| ||| Sbjct 1623079 CTTAATGAGCTCCAAAAAAACCCAAATGTAATCTTATTTATTGATGAGATACATACTATT 1623138 Query 48597 ATGGGTGCTGGTGGTAGCAGCACTGGATCTATGGATATGAGC-AATATCATGAAACCTGC 48655 | ||||||||| | || | | |||||||||||| ||| || || |||||||||| Sbjct 1623139 GTTGGTGCTGGTTCT-GCTG--CCGGATCTATGGAT-GCAGCAAACATGCTGAAACCTGC 1623194 Query 48656 ACTTTCACGTGGTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAA 48715 ||| | | || || |||| ||| || || |||||| || ||||| | | || Sbjct 1623195 CCTTGCGAGAGGAGAAATTCAATGTATTGGAGCTACAACTCTCGATGAATACAGGAAAAA 1623254 Query 48716 CATTGAAAAAGATGCTGCATT 48736 || |||||||||| |||||| Sbjct 1623255 TATCGAAAAAGATGGTGCATT 1623275 >seq2330 Length=1066040 Score = 111 bits (122), Expect = 3e-19 Identities = 174/242 (72%), Gaps = 9/242 (4%) Strand=Plus/Minus Query 48489 GCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACTT 48548 || || ||||||||||||||| |||| ||||||||||| ||| || | || ||| | Sbjct 194598 GCAGGAACAAAATACCGTGGTCAATTTGAAGAACGTATTAAAGCGATATTGAACGAATTG 194539 Query 48549 A--AAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTG 48606 |||||| ||| || ||| |||| || || || |||||| || | || || | Sbjct 194538 TCTAAAAACCCGAACATT--ATTCTGTTTATAGACGAGATACATACCATAGTAGGCGCAG 194481 Query 48607 GTGGTAGCAGCACTGGATCTATGGATATGAGCAAT-ATCATGAAACCTGCACTTTCACGT 48665 ||||| ||| || ||||| ||||| ||||| || ||||||| || | | ||| Sbjct 194480 GTGGT-GCAACA--GGATCACTGGATGC-AGCAAACATGCTGAAACCGGCTTTGGCTCGT 194425 Query 48666 GGTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTGAAAAA 48725 ||||| || | ||||||||||||||| || ||||||||| | |||||||||||| Sbjct 194424 GGTGAAATACAATGTATCGGTGCAACAACACTCGATGAATATCGCAAAAACATTGAAAAA 194365 Query 48726 GA 48727 || Sbjct 194364 GA 194363 >seq3213 Length=2170589 Score = 109 bits (120), Expect = 1e-18 Identities = 251/375 (67%), Gaps = 20/375 (5%) Strand=Plus/Plus Query 49185 GGTGCTTTCATGTTTGTTGGACCATCTGGTACTGGTAAAACTGAAATCACAAAAGCACTT 49244 ||| ||||| | || |||| || | || |||||||| ||| || ||||||||||| Sbjct 1170593 GGTACTTTCTTATTCCTTGGCCCGACGGGGGTAGGTAAAACCGAACTCGCAAAAGCACTT 1170652 Query 49245 GCTGAAGCAATGGGTTC-----TGAG------CTAATTCGTTTTGATATGTCAGAGTTTT 49293 || ||| ||| ||| ||| || ||| | |||||||| || | | Sbjct 1170653 GCAGAATTTATG--TTCAATGATGAAGACTCTCTTATTAGAATTGATATGAGTGAATATA 1170710 Query 49294 CGCAAGACCACACTGTATCTAAACTTATTGGTTCACCTCCTGGATATGTAGGACATGAAA 49353 | || | || | ||| | ||| ||||| | |||||||||||||| ||| ||||| Sbjct 1170711 TGGAAAAACATAATGTTGCACGACTGGTTGGTGCTCCTCCTGGATATGTGGGATATGAAG 1170770 Query 49354 CAGGCAATGGTCAGCTTCTTGATAAAGTTGAACAATTCCCTAATGCAGTACTTCTACTGG 49413 |||| ||||| | || ||| || ||| || ||||| |||| | | Sbjct 1170771 AAGGC---GGTCAATTGACCGAAGCAGTCAGACGCAAGCCTTATTCAGTAATTCTTTTTG 1170827 Query 49414 ATGAAATTGAAAAAGCACATCCAAAAGTACTGCTGACATTC--CTACAAGTATTGGATGA 49471 |||||||||| ||||| ||||| | || | | | ||| || ||| | || ||||| Sbjct 1170828 ATGAAATTGAGAAAGCGCATCCGGATGTTTT--TAATATTATGCTCCAAATCTTTGATGA 1170885 Query 49472 AGGGCGTTTGACTGGTTCACAAGGAAAAACAGTTTACTTCAATAATATTACTGTTATTAT 49531 ||||||||||||| |||| |||| | ||||||| | || || |||| | | | ||||| Sbjct 1170886 TGGGCGTTTGACTGATTCAAAAGGCAGAACAGTTGATTTTAAAAATACTCTTATAATTAT 1170945 Query 49532 GACTACAAACCTTGG 49546 |||| |||| |||| Sbjct 1170946 GACTTCAAATATTGG 1170960 Score = 84.2 bits (92), Expect = 5e-11 Identities = 180/266 (68%), Gaps = 11/266 (4%) Strand=Plus/Plus Query 48488 TGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACT 48547 ||| || ||||||||||||||||| || ||||||||| | || ||||| | ||| | Sbjct 1041909 TGCAGGGACAAAATACCGTGGTGAGTTTGAAGAACGTCTAAAAAAGATTATGGATGAAAT 1041968 Query 48548 TAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTGG 48607 | || || |||| | || | | ||||||||| | || | |||| ||||| || Sbjct 1041969 TCGCCAATCAGGAAATATTATCCTTGTGATTGATGAAATGCACACATTGATTGGTGCAGG 1042028 Query 48608 TGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCACGTGG 48667 | |||| | || | || ||| | |||||| |||||||||| | ||| | || Sbjct 1042029 -AGCGGCAGAA--GGCGCAATTGATGCGGCTAATATCTTGAAACCTGCTTTATCAAGAGG 1042085 Query 48668 TGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACA----TTGAAA 48723 || || | ||||| ||||||||||| | || || || ||||| | | |||| Sbjct 1042086 AGAGATACAAGTTATTGGTGCAACAACATCGGATGAGTA----CAGAAAATATGTAGAAA 1042141 Query 48724 AAGATGCTGCATTTTCCCGCCGCTTC 48749 | ||| ||||||| ||||| ||| Sbjct 1042142 AGGATTCTGCATTAGAACGCCGTTTC 1042167 Score = 84.2 bits (92), Expect = 5e-11 Identities = 226/343 (66%), Gaps = 12/343 (3%) Strand=Plus/Plus Query 49217 TGGTAAAACTGAAATCACAAAAGCACTTGCTGAAGCAATG---GGTTCTGA-GCTAATTC 49272 |||||||||||| | | || || | || ||||| ||| ||||| || | |||| Sbjct 1042812 TGGTAAAACTGAGCTTGCTAAGGCTTTAGCAGAAGCGATGTTCGGTTCAGAAGATAATAT 1042871 Query 49273 GTT-----TTGATATGTCAGAGTTTTCGCAAGACCACACTGTATCTAAACTTATTGGTTC 49327 | | ||||||||||||| ||| | || | || | || |||||||||||||| Sbjct 1042872 GATAAGAGTTGATATGTCAGAATTTATGGAAAAACATTCAACTTCAAAACTTATTGGTTC 1042931 Query 49328 ACCTCCTGGATATGTAGGACATGAAACAGGCAATGGTCAGCTTCTTGATAAAGTTGAACA 49387 ||||| || ||||| || |||| ||| || || | ||| ||||| | Sbjct 1042932 TCCTCCGGGGTATGTTGGTTATGATGATGGC---GGACATATGACTGAGCAAGTTCGTAA 1042988 Query 49388 ATTCCCTAATGCAGTACTTCTACTGGATGAAATTGAAAAAGCACATCCAAAAGTACTGCT 49447 | ||| || ||||| | || | ||||| ||||||||||| || || | ||| | Sbjct 1042989 AAAGCCTTATTCAGTAATCTTATTCGATGAGATTGAAAAAGCTCACCCTGATGTATTCAA 1043048 Query 49448 GACATTCCTACAAGTATTGGATGAAGGGCGTTTGACTGGTTCACAAGGAAAAACAGTTTA 49507 | | | || ||| | |||||||| || | ||||||| | | |||| || || | Sbjct 1043049 TATAATGCTTCAAATCTTGGATGATGGAAGATTGACTGATGCTAAAGGTAAGCATATTAA 1043108 Query 49508 CTTCAATAATATTACTGTTATTATGACTACAAACCTTGGAGCA 49550 |||||| || | | | |||| ||||| |||| |||| ||| Sbjct 1043109 CTTCAAAAACACTGTTATTATAATGACATCAAATGTTGGGGCA 1043151 >seq95 Length=1800565 Score = 102 bits (112), Expect = 2e-16 Identities = 289/434 (67%), Gaps = 10/434 (2%) Strand=Plus/Minus Query 48345 AAAAAGAATGCTATTCTTACT-GGTGATGCAGGAGTCGGTAAAACTCAGATCGTCGATGG 48403 ||||| ||| || | |||| | ||||| ||||| || |||||||| || || || || Sbjct 1539276 AAAAATAATCCTCT-CTTAGTAGGTGAGGCAGGCGTTGGTAAAACGGCTATTGTGGAAGG 1539218 Query 48404 TTTTGCACAAGCC-ATTGCTGATGGTGACGTACCTGA-CTATCTGAAAGGTGTTGAGGTA 48461 | | ||| |||| |||| |||||| | ||||| || |||| | |||| | | | || Sbjct 1539217 TCTAGCA-AAGCGTATTGTTGATGGGCAAGTACCAGAACTAT-TAAAAGATA--GCGTTA 1539162 Query 48462 TTA--TCTCTTAACGTTTCTGCTGTAACTGCTGGTACAAAATACCGTGGTGAATTCGAAG 48519 || || ||| | || ||| || || ||||| |||||||||||||| || || Sbjct 1539161 TTTATTCCCTTGATCTTGGCGCTTTATTGGCAGGTACCAAATACCGTGGTGATTTTGAGA 1539102 Query 48520 AACGTATGGAAGGTATTATTAAAGAACTTAAAAAACGAGAAAATGTAATTTTGTTCATTG 48579 |||| | ||| || | ||||| || ||||| || |||| ||||| || |||| Sbjct 1539101 AACGCTTTAAAGCCGTTTTAAAAGACCTAAAAAAGCGTACCAATGCGATTTTATTTATTG 1539042 Query 48580 ATGAAGTACATATTATGATGGGTGCTGGTGGTAGCAGCACTGGATCTATGGATATGAGCA 48639 ||||| |||||| || || ||||| || | || | || |||||||| | Sbjct 1539041 ATGAAATACATACCATTATCGGTGCAGGCGCTACTACTGGCGGTGCTATGGATGCTTCAA 1538982 Query 48640 ATATCATGAAACCTGCACTTTCACGTGGTGATATTCGTGTTATCGGTGCAACAACTTATG 48699 || | | ||||| || ||| ||||| | || ||| | | || | || || | | Sbjct 1538981 ATTTATTAAAACCAGCCCTTAGCAGTGGTCAAATCCGTTGTGTAGGCTCTACCACATTTA 1538922 Query 48700 AGGAATATCGCCAGAACATTGAAAAAGATGCTGCATTTTCCCGCCGCTTCACTAAAATTG 48759 | |||||||| | |||| |||||| || || || || || ||| ||| | | Sbjct 1538921 AAGAATATCGTGGTATTTTTGATAAAGATCACGCCTTATCGCGTCGTTTCCAGAAAGTGG 1538862 Query 48760 ATGTAGTTGAACCT 48773 |||| ||||||||| Sbjct 1538861 ATGTGGTTGAACCT 1538848 >seq179 Length=2312354 Score = 91.5 bits (100), Expect = 3e-13 Identities = 164/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 48489 GCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACTT 48548 || |||||||||||| | || |||| |||||| | ||| ||| || || | || || Sbjct 2060602 GCAGGTACAAAATACAGGGGACAATTTGAAGAAAGAATGAAAGCCATAATAGATGAGCTG 2060661 Query 48549 AAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTGGT 48608 | |||| |||| || || || || ||||| |||||| || | || || ||| Sbjct 2060662 ATAAAAGCTACCGATGTTATATTATTTATAGATGAGATACATACAATAGTTGGCGCCGGT 2060721 Query 48609 GGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCACGTGGT 48668 || | | | ||||| ||||| | ||||| | |||||||| || |||| ||| Sbjct 2060722 GGAACGA---CAGGATCACTGGATGCGGCAAATATGCTTAAACCTGCCCTGGCACGCGGT 2060778 Query 48669 GATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTGAAAAAGA 48727 || || | ||| |||||||| || || |||||||| ||||| ||||||||||| Sbjct 2060779 GAAATCCAATGTATAGGTGCAACTACCCTCGATGAATATCGACAGAATATTGAAAAAGA 2060837 >seq875 Length=1099013 Score = 86.0 bits (94), Expect = 1e-11 Identities = 158/222 (71%), Gaps = 11/222 (5%) Strand=Plus/Minus Query 48519 GAACGTATGGAAGGTATTATTAAAGAACTT--AAAAAACGAGAAAATGTAATTTTGTTCA 48576 ||||| || | | |||| | || |||||| ||| ||| ||| || || ||||||| Sbjct 361741 GAACGAATCAAGGCTATTCTAAATGAACTTTCAAAGAACCCGAATATT--ATCTTGTTCA 361684 Query 48577 TTGATGAAGTACATATTATGATGGGTGCTGGTGGTAGCAGCACTGGATCTATGGAT-ATG 48635 |||| || |||||| || | || ||||| ||| || || ||||||||| || Sbjct 361683 TTGACGAGATACATACAATCGTTGGAGCTGG-CTCAGCGTCA--GGTTCTATGGATGCTG 361627 Query 48636 AGCAATATCATGAAACCTGCACTTTCACGTGGTGATATTC-GTGTTATCGGTGCAACAAC 48694 | ||||| ||||||| ||| | | |||||||| |||| ||| ||| ||||| ||||| Sbjct 361626 CG-AATATGTTGAAACCGGCATTAGCTCGTGGTGAAATTCAGTG-TATTGGTGCTACAAC 361569 Query 48695 TTATGAGGAATATCGCCAGAACATTGAAAAAGATGCTGCATT 48736 || ||||| || | || || |||||||||| |||||| Sbjct 361568 GCTAGATGAATACCGTAAAAATATAGAAAAAGATGGTGCATT 361527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106106136509504