Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq95 266 9e-67 >seq95 Length=1800565 Score = 266 bits (294), Expect = 9e-67 Identities = 562/832 (68%), Gaps = 15/832 (2%) Strand=Plus/Plus Query 18008 ATGACTACGACAGTTAATTCAGACATGATCATCTACAACCAACTGGCTCAAACAGCCTAT 18067 ||| | || || |||||| |||| ||| | || || || | || || ||||| || || Sbjct 415774 ATGGCAACTACCGTTAATACAGATATGGTTATTTATAATGACCTAGCACAAACCGCTTAC 415833 Query 18068 TTAGAACGATTACAAGACAAT-TTGAATGTTTTTAATGAAGCTTCCAATGGTGCGATTAT 18126 | ||||| | |||||| ||||| | ||||| | | || ||||| || || || Sbjct 415834 CTTGAACGTATTCAAGACGTGATTGAAA-TCTTTAACGTTTCATCTAATGGAGCAATCAT 415892 Query 18127 TTATCGTAATGAAATCATTCAAGGTGACTTCAATAAAAATGCATTCTACAAAGTTGGTGG 18186 | || ||| | ||| | || || || ||| || || |||||| ||||||| Sbjct 415893 TCTAAACAACGAATTAATTGAGGGGGATTTACGCAAACGAGCTTTTTACAAAATTGGTGG 415952 Query 18187 TAGCATTAAACATCGCGATGTGAACTCCAATGCAAAAGTAACTCCGGAAAAAATCGGTGC 18246 | || |||| || || || |||||| | || ||||| || | ||||||| ||| | Sbjct 415953 TTCTGTTGAACACCGTGACGTAAACTCCGACGCTAAAGTCACCGCT-AAAAAATTGGTTC 416011 Query 18247 AGGTGAGTCTGTAGGTGTAAAAATTCCATATAAATATGGTCCTTATGCATCAACTGAAGA 18306 ||||| ||||| || ||| | |||| |||||| || || ||| | | || ||||| Sbjct 416012 TGGTGAAATGGTAGGCGTGAAAGTACCATTTAAATACGGACCATATCAAACGACCGAAGA 416071 Query 18307 GGCATTTAAGCGCCGTGCTCGTACACCAGAAGAATTTGCTATGGTTGTTGGTTACGATCT 18366 || ||||| | || ||||| | || ||||| ||| | ||| |||| || | ||| Sbjct 416072 AGCGTTTAAAAGACGCGCTCGCAGTCCTGAAGAGTTTTCAATGCTTGTGGGGCAGGATTA 416131 Query 18367 TGCAGATGCATTGGTTGCAGGCCGATTAGAGTACAGTT----TAGCTTCTTTAAAAGCTG 18422 |||||||||| | ||| ||| ||| | | | | | || ||| | ||||| Sbjct 416132 TGCAGATGCAGTACTTGAAGG----TTATATTGCTTATGCAATGGCCTCTCTTAAAGCGT 416187 Query 18423 CTATTTCTAGT--AATCCCGATATGGTTGCGAAAGGAAGTATCGTTGTTGATGGCCGCAA 18480 |||| | || || | ||||||||||| || ||||| | | |||||| || Sbjct 416188 CTAT--CATGTCAAACGCTGATATGGTTGCATCAGCGAGTATTGCTACAGATGGCAAGAA 416245 Query 18481 AGCATTAACTCGTGGTATGCGAAAGTTTGGTGATAAGTTTGGCCGAATTGGCTTATGGGT 18540 |||||||||| || ||||| || ||||||||| | | || |||| || ||||| Sbjct 416246 AGCATTAACTAAAGGCATGCGTAAATTTGGTGATCGATCAGCTCGTATTGCATTGTGGGT 416305 Query 18541 GATGAACTCAGATACATATTTCGATATTGTCGATGATGCTATCACTAAGCAAATTTACGG 18600 ||| | || ||||| || | || ||| | || || ||| | |||| ||| Sbjct 416306 AATGGATAGTACCACTTATTTTGACTTAGTAGATCAAGCGATTACTGACAAAATATACAA 416365 Query 18601 TGAATCTGAAATCGTTATCTATGGTGGTTTACCAGGAACCTTAGGAAAGCCGGTATTGGT 18660 ||| | || || ||||||||||||||| ||| || || ||||| ||||| ||| | || Sbjct 416366 CGAAGCAGATATTGTTATCTATGGTGGTCAACCGGGTACATTAGGTAAGCCAGTACTAGT 416425 Query 18661 GACGGATGCTGTAGGTGATAACGATGCTTTTGGCTTGCAGTATGGTGCTGTAACAGTAAC 18720 || ||| | | || | | || |||||| ||||||| ||| |||||||| || || Sbjct 416426 TACTGATAAGGCACCTGTTGATAGTGTTTTTGGTTTGCAGTCTGGCGCTGTAACGGTTAC 416485 Query 18721 TGAATCACAAGTACCGGGCTTCCGAGCTTATGACATCAATGATGAAGAAAACTTAGCAAT 18780 ||||||||| ||||||||||||| ||| || ||||| ||||||| | ||||| Sbjct 416486 TGAATCACAGTTACCGGGCTTCCGCAGTTACCCTATTGATGATCAAGAAAATATTGCAAT 416545 Query 18781 CGGTATGCGTGCTGAAGGTGCATTTAACCTAGATATTCTTGGTTATAGTTGG 18832 || | | |||||||| | ||||||||||| | | |||||||| ||| Sbjct 416546 GGGGTTCAGAGCTGAAGGAACTTTTAACCTAGACTTATTAGGTTATAGCTGG 416597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145000498556704