Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq1991 134 4e-27 seq1599 134 4e-27 seq373 129 2e-25 seq1191 125 2e-24 seq179 109 2e-19 seq126 109 2e-19 seq2282 100 9e-17 seq3099 96.9 1e-15 seq2298 84.2 7e-12 >seq1991 Length=147557 Score = 134 bits (148), Expect = 4e-27 Identities = 205/287 (71%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 45436 TATGAAACAATATCTAGACTTGCTGCA-AGACATCTTAGAAAACGGCGTGGAGAAAGAA- 45493 ||||||||||||||| || | ||| | ||| ||| || | || || || ||||| Sbjct 6670 TATGAAACAATATCTCGATCTTCTGGAGAGA-ATCAAAGCCGAGGGAGTTGA-AAAGAGC 6613 Query 45494 GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAG 45553 || ||||| ||||| ||||| | || ||||| | ||| |||||||| || | | Sbjct 6612 GACCGGACAGGAACGGGCACGATCAGTGTTTTCGGGCACCAGATGCGCTTTGACCTCAAT 6553 Query 45554 GACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTG 45613 || || || || | |||| || ||||| ||||| | ||||||||||| ||||||| Sbjct 6552 GAGGGTTTTCCCGTACTGACCACAAAAAAACTGCATCTACGCTCGATCATACATGAACTT 6493 Query 45614 CTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATT 45673 || |||||| | || || ||||| ||| | ||| | || || ||| || ||||| Sbjct 6492 CTGTGGTTTCTCAAGGGAGATACCAATATAAAATATCTTCACGATAATAACGTTACGATA 6433 Query 45674 TGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGG 45720 |||||||||||||| |||| ||||| | || ||||| ||||||| Sbjct 6432 TGGGACGAGTGGGCGGATGCCGACGGCAACCTGGGCCCGGTCTACGG 6386 >seq1599 Length=3738065 Score = 134 bits (148), Expect = 4e-27 Identities = 183/253 (72%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 45488 AAAGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAAC 45547 ||||||||||| || || ||||| || | | ||||| | ||| |||| |||||| Sbjct 2426091 AAAGAAGATCGAACAGGTACAGGAACGATCAGTATCTTCGGACATCAAATGCGTTTTAAC 2426150 Query 45548 TTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTAT 45607 || || ||||| || | | || || ||||| |||||| | ||||| |||||| Sbjct 2426151 ATGGGAGAGGGATTTCCCTTACTAACAACAAAAAAATTGCATTTGAAATCGATTATTTAT 2426210 Query 45608 GAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTG 45667 || ||||||||||| || |||| ||||| ||||| | ||||| ||||| |||| || Sbjct 2426211 GAGTTGCTCTGGTTTCTACAAGGTGATACAAATGTCAGGTATTTACAGGAACATGGAGT- 2426269 Query 45668 ACG-ATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCA 45726 ||| || ||| | || ||||| |||||||| |||||| | || | || || || || Sbjct 2426270 ACGTATCTGGAATGAATGGGCAGATGAAAATGGCGATTTAGGACATATTTATGGTTATCA 2426329 Query 45727 ATGGCGGTCGTGG 45739 ||||||||| ||| Sbjct 2426330 ATGGCGGTCATGG 2426342 >seq373 Length=1274844 Score = 129 bits (142), Expect = 2e-25 Identities = 217/307 (71%), Gaps = 8/307 (3%) Strand=Plus/Plus Query 45437 ATGAAACAATATCTAGACTTGCTGCAAGACATCTTAG--AAAACGGCGTGGAGAAAGAAG 45494 |||||||||||||| || || ||| | ||| || | | ||||| || || |||| Sbjct 928972 ATGAAACAATATCTTGATTTAATGC--GTCATGTTCGGGATAACGGAGTATTTAAGGAAG 929029 Query 45495 ATCGGACGGGAACAGGCACATTGTCG-GTGTTCGGCCGTCAGCTGCGCTTTAA-CTTGCA 45552 |||| || ||||| || || || | | || || || ||| |||||||||| || || Sbjct 929030 ATCGTACAGGAACGGGTAC-TTATAGTGTATTTGGTTATCAAATGCGCTTTAATCTAGC- 929087 Query 45553 GGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACT 45612 ||| || || ||| | || || || ||||| | ||| | ||||| || |||| | Sbjct 929088 GGATGGGTTTCCGTTAGTTACCACTAAAAAATGCCATCTTAAGTCGATTATCCATGAGTT 929147 Query 45613 GCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGAT 45672 | |||||||| | |||||||| ||| |||| || | | || |||||||||| || Sbjct 929148 ATTGTGGTTTTTGCAGGGCGATACCAATATTCGTTACCTTAAAGAAAATGGTGTGAGTAT 929207 Query 45673 TTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCG 45732 |||||| || ||||| ||||||||||| ||| | ||||| | || || |||||||| Sbjct 929208 TTGGGATGAATGGGCTGATGAAAACGGTGATTTAGGCCCTGTGTATGGTTATCAATGGCG 929267 Query 45733 GTCGTGG 45739 || ||| Sbjct 929268 TTCATGG 929274 >seq1191 Length=1801643 Score = 125 bits (138), Expect = 2e-24 Identities = 427/663 (64%), Gaps = 2/663 (0%) Strand=Plus/Minus Query 45553 GGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACT 45612 ||| || || ||| | |||| || || ||| |||| | || || || || ||| | Sbjct 1359030 GGAAGGCTTTCCGGTGCTGACTACCAAGAAGCTGCACCTTAAGTCCATTATATACGAATT 1358971 Query 45613 GCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGAT 45672 ||| |||||| | ||||||||| ||||| ||||||||||| |||| ||| || Sbjct 1358970 GCTATGGTTTCTGGCAGGCGATACCAATGTAAAATATTTGCAGGAACATGGAGTGCGTAT 1358911 Query 45673 TTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCG 45732 ||| |||| ||||| || || || ||||| || |||| || ||||| |||||||| Sbjct 1358910 ATGGAACGAATGGGCTGACGAGAATGGCGAACTAGGCCATATATACGGTTATCAATGGCG 1358851 Query 45733 GTCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAAAT 45792 |||||| || | | || | ||||||| || | | || | || ||| Sbjct 1358850 TTCGTGGCCAGACTATAATGGCGGACATATCGACCAGATAACAGATGTAGTGAATACAAT 1358791 Query 45793 CAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGG 45852 || | || || | ||||| || | | || | |||||||| || || | || Sbjct 1358790 CAGGAATAATCCCGATTCGCGCCGTATTATAGTAAATGCGTGGAATGTTGCCGACCTGCC 1358731 Query 45853 GGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGGTT 45912 | ||||| |||| || || ||| | ||| |||||||| || |||||||| || Sbjct 1358730 TAATATGAACCTGCCTCCCTGCCATGCCTTCTTCCAGTTTTATGTAGCGAATGGTAAATT 1358671 Query 45913 G-TCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATCG 45971 | | | || | | | || || || ||||| |||||| ||| | ||||| || |||| Sbjct 1358670 GAGCCTTCAACT-GTATCAACGCAGTGCCGATATATTTCTGGGAGTTCCGTTCAATATCG 1358612 Query 45972 CTAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCGGCGAAC 46031 || ||||| |||||| | ||| | || || | ||||| | | || ||| Sbjct 1358611 CTTCTTATGCACTGTTGCTGAAGATGATGGCACAGGTAACAGACCTTCAGGCAGGAGAAT 1358552 Query 46032 TCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGC 46091 | | ||| ||||| | |||| | || | || |||||||| || | ||| |||| Sbjct 1358551 TTGTCCACACATTGGGCGATGCCCATATATATACCAACCATCTGGAGCAGGTGAAGCTGC 1358492 Query 46092 AGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAGCCGCCGTCTA 46151 | || | ||||| | || ||||| || | | |||||| | | | | || Sbjct 1358491 AACTATCCCGCGACCTTCGTCCGCTACCCGAAATGAAGATCAATCCGGATGTGAAAAGTA 1358432 Query 46152 TCTTTGACTATGAATACGAGGATTTTGAATTTGTCGGCTATGACCCGCACCCGGCGATTA 46211 | || || | |||| || ||||| |||| | |||||||| || |||||| |||| Sbjct 1358431 TTTTCGATTTCAAATATGAAGATTTCCAATTGGAGGGCTATGATCCTCACCCGCATATTA 1358372 Query 46212 AGG 46214 ||| Sbjct 1358371 AGG 1358369 >seq179 Length=2312354 Score = 109 bits (120), Expect = 2e-19 Identities = 209/306 (68%), Gaps = 4/306 (1%) Strand=Plus/Plus Query 45436 TATGAAACAATATCTAGACTTGCTGCAAGACATCTTA--GAAAACGGCGTGGAGAAAGAA 45493 |||| |||||||||| || || | || |||| | | |||||||| | ||| || Sbjct 182095 TATGCAACAATATCTGGATTTATT--AAAACATGTAAAAGAAAACGGAACTGTAAAAAAA 182152 Query 45494 GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAG 45553 || || || |||||||| || | || ||||| ||| || | |||||| | ||| Sbjct 182153 GACCGTACAGGAACAGGAACGTCCAGCGTTTTCGGTTACCAGATGAGATTTAACCTTCAG 182212 Query 45554 GACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTG 45613 || || || ||| |||| || ||||| | ||| | || || ||||||||| | Sbjct 182213 GAAGGGTTTCCGTGTCTGACAACCAAAAAACTTCATTTAAAATCAATAATTTATGAATTA 182272 Query 45614 CTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATT 45673 | |||||||| || || ||||| ||| | ||| | | || |||| || | || Sbjct 182273 TTATGGTTTTTGAACGGAGATACCAATATAAAATATCTAAATGAACATGGAGTAAAAATA 182332 Query 45674 TGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGG 45733 ||| |||| ||||||||||||||||| || ||||| | | ||||| |||||||| Sbjct 182333 TGGAACGAATGGGCCGATGAAAACGGAGACCTCGGACATGTATACGGATATCAATGGCGT 182392 Query 45734 TCGTGG 45739 || ||| Sbjct 182393 TCATGG 182398 >seq126 Length=3533043 Score = 109 bits (120), Expect = 2e-19 Identities = 272/411 (66%), Gaps = 8/411 (2%) Strand=Plus/Plus Query 45437 ATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAA----GA 45492 |||||||||||| ||||| | |||||| || | |||| | ||| ||| || Sbjct 1886591 ATGAAACAATATTTAGACCTCCTGCAACGAGTCCTG---AACGAAG-GGACAAAAAAGGA 1886646 Query 45493 AGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCA 45552 ||| || || ||||| || || | ||||| || | |||| |||| ||||| || Sbjct 1886647 AGACCGCACAGGAACGGGAACCCTAAGTGTGTTTGGTCATCAGATGCGATTTAATATGGC 1886706 Query 45553 GGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACT 45612 ||| || || ||| | | || || ||||| ||||| | || |||||||||||| | Sbjct 1886707 GGATGGCTTTCCGGTTCTTACTACAAAAAAATTGCACCTAAAATCTATCATTTATGAATT 1886766 Query 45613 GCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGAT 45672 ||| ||||| || | || |||| ||| | || | || | |||| ||| Sbjct 1886767 GCTTTGGTTCTTGCAGGGAAATACTAATATAAAATACCTCACCGATCACAGTGTCCGGAT 1886826 Query 45673 TTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCG 45732 ||| | || ||||||||||||||||| ||| | || || || || || || |||||||| Sbjct 1886827 CTGGAATGAATGGGCCGATGAAAACGGGGATTTAGGACCGATTTATGGAGCCCAATGGCG 1886886 Query 45733 GTCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAAAT 45792 || ||| | | |||| |||| ||||||| || | | || |||| ||| Sbjct 1886887 ATCCTGGCCGGACTATAACGGAGGAACGATCGACCAGATCACCGAAGTTGTTAATACAAT 1886946 Query 45793 CAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGC 45843 || || ||| | || ||||| | |||| || || |||||||| || Sbjct 1886947 AAAAAATAATCCGGATTCTCGGCGTATCATTGTCAGTGCATGGAACGTTGC 1886997 >seq2282 Length=143344 Score = 100 bits (110), Expect = 9e-17 Identities = 178/260 (68%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 45473 GAAAACGGCGTGGAGAAAGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGT 45532 || || |||||||| ||| ||| | || || ||||||||| || ||||| || | Sbjct 11918 GACAATGGCGTGGATAAAATGGATAGAACCGGTACAGGCACACGTTCTGTGTTTGGTCAG 11859 Query 45533 CAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATC 45592 ||| |||||||| | || | || ||||| | |||| || ||||| ||||| | Sbjct 11858 CAGATGCGCTTTGATTTATCTAAAGGTTTCCCTTTAATGACAACTAAAAAAATGCATCTG 11799 Query 45593 CGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTG 45652 || ||| ||||||| | |||||| ||||||||||||| ||| || || | Sbjct 11798 AAAAGTATTATTCATGAACTTTTATGGTTTATAAAAGGCGATACAAATATTAAGTACCTT 11739 Query 45653 CAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCA 45712 || || ||||| | | || ||| | || ||||| |||||||| || || | || || Sbjct 11738 CAAGATAATGGCGGTAGAATCTGGAATGAATGGGCTGATGAAAATGGTAATTTAGGTCCT 11679 Query 45713 ATCTACGGCGCGCAATGGCG 45732 | |||||| | || ||||| Sbjct 11678 GTTTACGGCTCTCAGTGGCG 11659 >seq3099 Length=1637421 Score = 96.9 bits (106), Expect = 1e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 45494 GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAG 45553 || || || || ||||||||| | |||||||| | |||| |||| ||| || Sbjct 177040 GACCGTACAGGTACAGGCACAATCAGTGTGTTCGGACATCAGAGCCGCTATAATCTGGCT 176981 Query 45554 GACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTG 45613 || |||||||| | | || || ||||| | ||| | || ||||| ||||| || Sbjct 176980 GAGGGATTCCCTGTACTAACCACAAAAAAACTTCATCTTAAATCTATCATATATGAGTTG 176921 Query 45614 CTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACG-AT 45672 || ||||||||| ||| ||||| |||| |||||||| || |||| || ||| || Sbjct 176920 CTTTGGTTTTTAGCAGGTGATACAAATGCGAAGTATTTGCAAGACCATGGAGT-ACGCAT 176862 Query 45673 TTGGGACGAGTGGGCCGATGAA 45694 |||| |||| |||||||||||| Sbjct 176861 TTGGAACGAATGGGCCGATGAA 176840 >seq2298 Length=83281 Score = 84.2 bits (92), Expect = 7e-12 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 45494 GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAG 45553 || || |||||||| || ||| || ||||| ||| |||| ||||| ||| | Sbjct 73449 GACCGTACGGGAACGGGTACAAAAAGTGTATTCGGATATCAAATGCGTTTTAATTTGGAA 73390 Query 45554 GACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTG 45613 || || ||||| | | ||||| || || ||||| | ||||| |||||||| || Sbjct 73389 GAGGGTTTCCCTGTTTTAACGACAAAGAAACTGCATCTGAAATCGATTATTTATGAGTTG 73330 Query 45614 CTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATT 45673 || ||||||||||| || ||||| ||| || ||| | | || | || || | ||| Sbjct 73329 CTATGGTTTTTAAAGGGTGATACCAATATTAAATATCTAAAAGATCACGGCGTTAGTATT 73270 Query 45674 TGGGACGAGTGGGC 45687 |||||||| ||||| Sbjct 73269 TGGGACGAATGGGC 73256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157703957493488