Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq373 147 3e-30 seq1991 140 5e-28 seq1619 107 3e-18 seq2441 105 1e-17 seq1948 100 4e-16 seq1814 91.5 2e-13 seq2298 86.0 1e-11 >seq373 Length=1274844 Score = 147 bits (162), Expect = 3e-30 Identities = 221/309 (72%), Gaps = 4/309 (1%) Strand=Plus/Plus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCAGAC 122422 |||||||||||||| || ||| ||||| | ||||| || ||||| || | ||| Sbjct 928972 ATGAAACAATATCTTGATTTAATGCGTCATGTTCGGGATAACGGAGTATTTAAGGAAGAT 929031 Query 122423 CGTACGGGCACGGGCACCCTGTCGT-TATTCGGCGCACAAATGCGCTTTGACCT-GCAAA 122480 ||||| || ||||| || | | || |||| || |||||||||||| | || || | Sbjct 929032 CGTACAGGAACGGGTACT-TATAGTGTATTTGGTTATCAAATGCGCTTTAATCTAGCGGA 929090 Query 122481 AAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTC 122540 ||||| ||| | || || || ||||| || || || || ||||||||| | Sbjct 929091 TGGGTTT-CCGTTAGTTACCACTAAAAAATGCCATCTTAAGTCGATTATCCATGAGTTAT 929149 Query 122541 TGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCT 122600 ||||||| | |||||||||||| || | || || ||||| || || ||||| | Sbjct 929150 TGTGGTTTTTGCAGGGCGATACCAATATTCGTTACCTTAAAGAAAATGGTGTGAGTATTT 929209 Query 122601 GGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGTG 122660 ||||||||||||| |||||| | ||| || | ||||| ||||| ||| | ||||||||| Sbjct 929210 GGGATGAATGGGCTGATGAAAACGGTGATTTAGGCCCTGTGTATGGTTATCAATGGCGTT 929269 Query 122661 AGTGGCCAG 122669 ||||||| Sbjct 929270 CATGGCCAG 929278 >seq1991 Length=147557 Score = 140 bits (154), Expect = 5e-28 Identities = 189/252 (75%), Gaps = 11/252 (4%) Strand=Plus/Minus Query 122412 AAAAAGCAGACCGTACGGGCACGGGCACCCT--GTCGTTATTCGGCGCACAA-ATGCGCT 122468 ||| ||| ||||| || || |||||||| | || ||| ||||| |||| | ||||||| Sbjct 6619 AAAGAGC-GACCGGACAGGAACGGGCACGATCAGT-GTT-TTCGG-GCACCAGATGCGCT 6564 Query 122469 TTGACCTGCAAAAAGG--TTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCAT 122526 ||||||| ||| ||| ||||||| | | || || ||||| | || || ||||| || Sbjct 6563 TTGACCT-CAATGAGGGTTTTCCCG-TACTGACCACAAAAAAACTGCATCTACGCTCGAT 6506 Query 122527 CATCCATGAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAA 122586 ||| ||||| ||||||||||| |||| ||| |||||||| || | ||||| | || || Sbjct 6505 CATACATGAACTTCTGTGGTTTCTCAAGGGAGATACCAATATAAAATATCTTCACGATAA 6446 Query 122587 CAACGTCAGTATCTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGG 122646 ||||| | || ||||| || ||||| |||| || || || || |||||||| ||||| Sbjct 6445 TAACGTTACGATATGGGACGAGTGGGCGGATGCCGACGGCAACCTGGGCCCGGTCTACGG 6386 Query 122647 TAAGCAATGGCG 122658 | || ||||| Sbjct 6385 ATACCAGTGGCG 6374 >seq1619 Length=182432 Score = 107 bits (118), Expect = 3e-18 Identities = 83/98 (85%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 167025 AGGGGCATAGCTCAGCTGGCAGAGCACCGGTCTCCAAAACCGGGTGTCCAAGGTTCGAAT 167084 ||||| ||||||||| ||| |||||| ||||||||||||||| ||| | | ||||||||| Sbjct 25688 AGGGGTATAGCTCAGTTGGTAGAGCAGCGGTCTCCAAAACCGCGTGCCGAGGGTTCGAAT 25629 Query 167085 CCTTGTGCCCCTGCCAAATTTAGCCTGCAAGTTCAGTT 167122 |||| ||||||||||||| | ||| | ||||||||| Sbjct 25628 CCTTCTGCCCCTGCCAAA--TGGCCCGGTAGTTCAGTT 25593 >seq2441 Length=2995558 Score = 105 bits (116), Expect = 1e-17 Identities = 211/310 (68%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 122362 CATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGG-GCACGAAAAAGCAG 122420 ||||||||||||| |||| ||||| | || | | | || | || | |||| || Sbjct 2867187 CATGAAACAATATTTGGATTTACTAGATAGAGTACTAAAAGAAGGCGTAC-ACAAAGAAG 2867129 Query 122421 ACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAA 122480 ||||||| ||||| || || | ||||||| || ||||| |||||||| | Sbjct 2867128 ACCGTACAGGCACAGGAACAATCAGCGTATTCGGACACCAGATGCGTTTTGACCTTAACG 2867069 Query 122481 AAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTC 122540 | |||||||| | || ||||| ||| ||||||| ||||| || ||||| |||| Sbjct 2867068 ATGGTTTCCCATGCCTGACTACCAAGAAGCTTCACCTGAAATCCATTATTCATGAACTTC 2867009 Query 122541 TGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCT 122600 | ||||| | | || ||||| || | |||| || |||||||| || |||||| Sbjct 2867008 TATGGTTTTTGAAAGGTGATACAAATGTTAAGTACCTCCAAGACAACGGAGTACGTATCT 2866949 Query 122601 GGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGTG 122660 || ||||||||||||| || | || | | || | || || || | ||||||||| Sbjct 2866948 GGAATGAATGGGCAGACGAGAACGGAGAATTAGGTCACGTTTATGGATACCAATGGCGTT 2866889 Query 122661 AGTGGCCAGA 122670 ||||| || Sbjct 2866888 CCTGGCCTGA 2866879 Score = 100 bits (110), Expect = 4e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 122459 CAAATGCGCTTTGACCTGCAAAAAGGTTTCCCGCTGG-TCACGACCAAAAAGGTTCACCT 122517 |||||| | ||| | ||| || | ||||| || ||| | || |||||||| |||| | Sbjct 2670394 CAAATGAGATTTAATCTGGAAGATGGTTTTCC-CTGCCTTACTACCAAAAAACTTCATTT 2670336 Query 122518 CCGCTCCATCATCCATGAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCT 122577 ||||||||||| || ||| |||||||||| | || ||||| || | | || || Sbjct 2670335 AAAGTCCATCATCCACGAACTTTTGTGGTTCCTTAAAGGTGATACAAATGTAAAATACCT 2670276 Query 122578 GAAAGACAACAACGTCAGTATCTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCC 122637 |||| ||| || |||||||| |||||||||| |||||| | || || | || | Sbjct 2670275 ACAAGAGAACGGGGTTCGTATCTGGAATGAATGGGCGGATGAAAACGGAGATTTGGGTCA 2670216 Query 122638 GGTGTACGGTAAGCAATGGCGTGAGTGGCCAGAT 122671 || || ||| | ||||||||| ||||| ||| Sbjct 2670215 TGTCTATGGTTATCAATGGCGTTCCTGGCCTGAT 2670182 >seq1948 Length=475166 Score = 100 bits (110), Expect = 4e-16 Identities = 179/259 (69%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 122414 AAAGCAGACCGTACGGGCACGGGCACCCTGTCGT-TATTCGGCGCACAAATGCGCTTTGA 122472 |||| |||||| || || || || ||| | | || |||| || || ||||| ||| | Sbjct 215256 AAAGAAGACCGAACCGGAACCGGAACC-TATAGTGTATTTGGTCACCAGATGCGGTTTAA 215314 Query 122473 CCTGCAAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCA 122532 | || || |||| || || || | || |||||||| | || || || || || | Sbjct 215315 CATGGAAGAAGGATTTCCTTTGCTTACCACCAAAAAATTACATCTTAAATCGATTATATA 215374 Query 122533 TGAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGT 122592 ||||| |||||||| || | || || || ||| | ||| || |||| | || Sbjct 215375 CGAGCTACTGTGGTTTCTGAAAGGAGACACGAACGCTAAATATTTGCAAGATCATGGTGT 215434 Query 122593 CAGTATCTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCA 122652 |||||||| | |||||||||||||| |||||||||| || | | ||||| | || Sbjct 215435 TCGTATCTGGAACGAATGGGCAGATGAGAATGGTAATCTTGGACATATTTACGGGTATCA 215494 Query 122653 ATGGCGTGAGTGGCCAGAT 122671 ||||||| |||||| ||| Sbjct 215495 ATGGCGTTCGTGGCCCGAT 215513 >seq1814 Length=228699 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 167024 TAGGGGCATAGCTCAGCTGGCAGAGCACCGGTCTCCAAAACCGGGTGTCCAAGGTTCGAA 167083 |||||| ||||||||| ||| ||||||| ||||||||||||| |||||| ||||||| Sbjct 141029 TAGGGGTATAGCTCAGTTGGTAGAGCACTGGTCTCCAAAACCAGGTGTCGTGAGTTCGAA 141088 Query 167084 TCCTTGTGCCCCTGCCAAATTTA 167106 || | ||||||||||| ||||| Sbjct 141089 TCTTACTGCCCCTGCCATATTTA 141111 >seq2298 Length=83281 Score = 86.0 bits (94), Expect = 1e-11 Identities = 170/252 (67%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 122362 CATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCAGA 122421 |||||||||||||| || | | || | ||| || ||||| || ||| || Sbjct 73507 CATGAAACAATATCAAGATCTTTTACGGCATGTTATGGATAACGGTAACTTTAAAAGTGA 73448 Query 122422 CCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAA 122481 ||||||||| ||||| || ||||||| |||||||| ||| | || || | Sbjct 73447 CCGTACGGGAACGGGTACAAAAAGTGTATTCGGATATCAAATGCGTTTTAATTTGGAAGA 73388 Query 122482 AGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCT 122541 |||||||| | | ||||| || || | || || || || || ||||| | || Sbjct 73387 GGGTTTCCCTGTTTTAACGACAAAGAAACTGCATCTGAAATCGATTATTTATGAGTTGCT 73328 Query 122542 GTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 122601 ||||| | | ||| |||||||| || | ||||| ||||| || ||| ||||| || Sbjct 73327 ATGGTTTTTAAAGGGTGATACCAATATTAAATATCTAAAAGATCACGGCGTTAGTATTTG 73268 Query 122602 GGATGAATGGGC 122613 ||| |||||||| Sbjct 73267 GGACGAATGGGC 73256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777391011843200