Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq3213 111 1e-19 seq2441 102 8e-17 seq2249 98.7 9e-16 seq179 84.2 2e-11 seq95 84.2 2e-11 seq1535 82.4 7e-11 >seq3213 Length=2170589 Score = 111 bits (122), Expect = 1e-19 Identities = 242/360 (67%), Gaps = 2/360 (1%) Strand=Plus/Minus Query 38634 AAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTCAATAGTCTGCACGA 38693 |||| |||||||| || || || || || | ||||| | ||||| ||||| || Sbjct 447316 AAGCTATTTCTTCTAAACAAGCTATTTTTATACCTTGGTTTTCTTCAATCGTCTGAACAT 447257 Query 38694 ATTGACCAGCTTCCA-TCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAATCCTCGT 38752 |||| |||| | | | | || || ||||||| || |||||||| | ||| || || Sbjct 447256 ATTGTGCAGCCTGTAATAATGATGCCG-GTGTTCCGGTATCAAGCCATGCAAAACCGCGG 447198 Query 38753 CCGAGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGATTGATATCAGTGATC 38812 || | | || || | ||||| | | || || || ||| | |||||| ||| Sbjct 447197 CCTAATAACTCAACATTCAACTTTCCTTTTTGCAGATAAACATTATTTAAATCAGTAATC 447138 Query 38813 TCCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAATAACAGAGTTATCA 38872 || | || || ||| ||||| | | | |||| || | || ||| ||| Sbjct 447137 TCTAACTCCCCGCGCTTAGAAGGTTTCAAAGTTTTTGCATATTCTACTACTTTGTTGTCA 447078 Query 38873 TAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTTCTCTTCAATA 38932 ||||||||||| || || | |||||||| ||||| ||||||| |||||| ||||||||| Sbjct 447077 TAGAAATACAATCCCGTTATAGCATAATTAGATTTTGGATTTTTAGGTTTTTCTTCAATA 447018 Query 38933 GAAATAGCTTGACGATTACTCCCAAATTCAACCACACCGAATCGTTCAGGATCTTTCACC 38992 || | || || | | |||||||||| ||||| || | || |||||||||||| Sbjct 447017 GATTTGACTACACCGTATTTGTCAAATTCAACAACACCAAACCTTTGCGGATCTTTCACC 446958 >seq2441 Length=2995558 Score = 102 bits (112), Expect = 8e-17 Identities = 263/397 (66%), Gaps = 4/397 (1%) Strand=Plus/Plus Query 38614 AGAAATCCACCCTTTTTTGAAAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACA 38673 ||||| ||| || || || || || || |||||| ||| || || ||||||||||| | Sbjct 456858 AGAAAGCCATCCCTTCTTAAAGGCTATACCTTCCAGGCAAGCGATTTTCAATCCTTGCCT 456917 Query 38674 GTTCTCAATAGTCTGCACGAATTGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTC 38733 || || ||| | | ||| | || ||||| ||| | || |||||||| || Sbjct 456918 TTTTTCTATAACTTCAATGAAATTACTTGCTTCAGAAAGAGAATCATGAGTTCCTGTATC 456977 Query 38734 AAGCCAAGTAAATCCTCGTCCGAGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCT 38793 | ||| | ||| |||| || | | | |||| || | | |||| || | | | Sbjct 456978 TAACCATGCAAAACCTCTACCAAAGATCTGTACTTTCAAATCATTCTCTTTTAAG-AATT 457036 Query 38794 GC-GATTGATATCAGTGATCTCCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCAC 38852 || |||| | ||| ||||| ||||||||||| || ||||| || | | || Sbjct 457037 GCTGATTTACTGTAGTTATCTCAAGTTCTCCACGAGCAGAAGGCTGTATGTTTTTCGCTA 457096 Query 38853 GTTGAATAACAGAGTTATCATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGAT 38912 | |||||| ||| ||| ||||| | ||||| || ||||||| |||||||||| Sbjct 457097 TATTAATAACTCGATTAGGATAAAAATAAAGTCCTGTTACTGCATAATTCGATTTAGGAT 457156 Query 38913 TTTCAGGTTTCTCTTCAATAGAAATAGCTTGACGATTACTCCCAAATTCAACCACACCGA 38972 ||| ||||| || |||||| | | | | || || | ||||||| | ||||| Sbjct 457157 ATTCCGGTTTTTCCTCAATACTGAGAACATTACCATCTTTATCAAATTCGGCTACACCAT 457216 Query 38973 ATCGTTCAGGATCTTTCACCAAATACCCGAAAATACA 39009 ||| ||| ||||| | ||| |||| || ||||||| Sbjct 457217 ATCTTTCCGGATCGCTGACCCAATAACC--AAATACA 457251 >seq2249 Length=266201 Score = 98.7 bits (108), Expect = 9e-16 Identities = 251/382 (66%), Gaps = 0/382 (0%) Strand=Plus/Plus Query 38634 AAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTCAATAGTCTGCACGA 38693 |||| |||||||| | || ||||| | || ||||| | || | || || | || Sbjct 209309 AAGCTATTTCTTCTATACAGGCAATATAAAAACCTTGTCGATTTTGTATGGTTTCTACAT 209368 Query 38694 ATTGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAATCCTCGTC 38753 | | ||| ||||| | ||| ||| || | ||||| || ||||| | |||||| || | Sbjct 209369 AATTACCTGCTTCTAACAGGCTGTCGCAATTACCTGTATCGAGCCATGCAAATCCCCGCC 209428 Query 38754 CGAGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGATTGATATCAGTGATCT 38813 ||| || | ||||| | || | ||||| || ||| ||| | ||| || |||| Sbjct 209429 CGAAAAGCTGTACTTGCAGGTTTCCTTCTTCGAGATAGACTTTATTCAAATCGGTAATCT 209488 Query 38814 CCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAATAACAGAGTTATCAT 38873 | ||| || || | ||||| | | || ||| | ||| | || |||| Sbjct 209489 CGTATTCGCCCCGAGGCGAAGGTTTCAGGGCTTTTGCTTTCTCGGCAACGGTCTTGTCAT 209548 Query 38874 AGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTTCTCTTCAATAG 38933 ||||||| | || | |||||||| | ||||| || || | |||||| ||||| | | Sbjct 209549 AGAAATAAAGTCCGGGTACAGCATAGTTCGATTTTGGCTTCTGAGGTTTTTCTTCCAACG 209608 Query 38934 AAATAGCTTGACGATTACTCCCAAATTCAACCACACCGAATCGTTCAGGATCTTTCACCA 38993 |||| ||| | || |||||||||| || || || | || ||||| || Sbjct 209609 AAATTACTTTATTGTTTTCATCAAATTCAACAACCCCATATGCTCTCGGGTCTTTTACAT 209668 Query 38994 AATACCCGAAAATACAAGCTCC 39015 |||| ||||||||||||||||| Sbjct 209669 AATAGCCGAAAATACAAGCTCC 209690 >seq179 Length=2312354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 247/376 (66%), Gaps = 6/376 (2%) Strand=Plus/Plus Query 38634 AAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTCAATAGTCTGCACGA 38693 ||||||||||||| | || | || ||||| |||| | | ||||| || | | | Sbjct 131197 AAGCAATTTCTTCAATACATGATGCTTTTAATCCCTGACGGGTTTCAATCGTTTCTATAA 131256 Query 38694 A--TTGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAATCCTCG 38751 | |||| ||||| | || ||| | | || ||||| || | ||| | ||| |||| Sbjct 131257 AATTTGA--AGCTTGTAACAAACTTTCCGGAGTGCCTGTATCTAACCATGCAAAACCTCT 131314 Query 38752 TCCGAG-AACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGATTGATATCAGTGA 38810 ||| | ||||| | ||||| | | |||| ||| | | ||| | |||||| | Sbjct 131315 TCCTAATAACTTT-ATATGTAATCTGTTTTCTTTCAGGAACATATTATTAAGATCAGTTA 131373 Query 38811 TCTCCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAATAACAGAGTTAT 38870 | || || ||||| | ||||| | | | | ||| || || ||| ||| Sbjct 131374 TTTCAAGCTCTCCCCTTTTTGAAGGCTTCAGATTTTTTGCTTTTTCTATCACATCATTAC 131433 Query 38871 CATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTTCTCTTCAA 38930 ||| ||||| | ||||| |||||||||| |||||||| ||||||||||| ||||| | Sbjct 131434 TATAAAAATATAGCCCTGTAACAGCATAATTAGATTTAGGTTTTTCAGGTTTTTCTTCTA 131493 Query 38931 TAGAAATAGCTTGACGATTACTCCCAAATTCAACCACACCGAATCGTTCAGGATCTTTCA 38990 | ||||| ||| | | | |||||| | || || ||| || |||||| ||| Sbjct 131494 TTGAAATCACTTTCCCTTCTTTATTAAATTCTGCAACCCCATATCTTTGAGGATCAGTCA 131553 Query 38991 CCAAATACCCGAAAAT 39006 | |||| || ||||| Sbjct 131554 CATAATAACCAAAAAT 131569 >seq95 Length=1800565 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 39245 GGTGTGGTGATGATTAAAATATCCTTAATGTCAGCCAACATCAATACCGATAAAGGGTAG 39304 ||||||| ||| ||||||||||| |||| | || | ||||| | ||| ||||| Sbjct 1424920 GGTGTGGAGATAATTAAAATATCTCTAATACCCGCTAGCATCAGGGTTGCTAATGGGTAA 1424979 Query 39305 TAGATCATGGGTTTGTCATACACAGGGAGCAATTGCTTGCTCACACTGCGTGTTACCGGA 39364 || ||||| ||||| ||||| ||||| | |||||| || |||| |||| ||| Sbjct 1424980 TAAATCATTGGTTTATCATAAACAGGCAACAATTGTTTAGAAACACCTAAGGTTATAGGA 1425039 Query 39365 TGAAGGCGGGTTCCACTTCCTCCCGCCAAAATAATACCTTT 39405 || | | |||||| || || || |||||||||||||| Sbjct 1425040 TGTAATCTAGTTCCAGAACCACCTGCTAAAATAATACCTTT 1425080 >seq1535 Length=1988416 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 39744 ATGATCCTCAACAAAAAGCCAGTCTCGCACCTGGTCGCCTTTACCATACACCGGAATCTC 39803 ||| || |||||| | |||||||| ||||| | ||| | |||||| ||||| | | Sbjct 1358419 ATGGTCTTCAACATACAGCCAGTCACGCACATTAGTGCCATCACCATATACCGGCAATTT 1358478 Query 39804 TTTATTCGTCAAG-ATACTTGTGATGATTTTTGGGATCAGCTTTTCTGGATGTTGATAAG 39862 |||| | || || ||| || | || ||| |||||||||||||| ||| ||||| | Sbjct 1358479 TTTAC-CTTCCAGTATATTTTTAATAATTAAAGGGATCAGCTTTTCCGGAAAATGATACG 1358537 Query 39863 GCCCAAAGTTATTGGAGCA 39881 | ||| ||||||||||||| Sbjct 1358538 GACCATAGTTATTGGAGCA 1358556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472483931839040