Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_020079.1
Length=147737
Score E
Sequences producing significant alignments: (Bits) Value
seq3213 111 1e-19
seq2441 102 8e-17
seq2249 98.7 9e-16
seq179 84.2 2e-11
seq95 84.2 2e-11
seq1535 82.4 7e-11
>seq3213
Length=2170589
Score = 111 bits (122), Expect = 1e-19
Identities = 242/360 (67%), Gaps = 2/360 (1%)
Strand=Plus/Minus
Query 38634 AAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTCAATAGTCTGCACGA 38693
|||| |||||||| || || || || || | ||||| | ||||| ||||| ||
Sbjct 447316 AAGCTATTTCTTCTAAACAAGCTATTTTTATACCTTGGTTTTCTTCAATCGTCTGAACAT 447257
Query 38694 ATTGACCAGCTTCCA-TCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAATCCTCGT 38752
|||| |||| | | | | || || ||||||| || |||||||| | ||| || ||
Sbjct 447256 ATTGTGCAGCCTGTAATAATGATGCCG-GTGTTCCGGTATCAAGCCATGCAAAACCGCGG 447198
Query 38753 CCGAGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGATTGATATCAGTGATC 38812
|| | | || || | ||||| | | || || || ||| | |||||| |||
Sbjct 447197 CCTAATAACTCAACATTCAACTTTCCTTTTTGCAGATAAACATTATTTAAATCAGTAATC 447138
Query 38813 TCCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAATAACAGAGTTATCA 38872
|| | || || ||| ||||| | | | |||| || | || ||| |||
Sbjct 447137 TCTAACTCCCCGCGCTTAGAAGGTTTCAAAGTTTTTGCATATTCTACTACTTTGTTGTCA 447078
Query 38873 TAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTTCTCTTCAATA 38932
||||||||||| || || | |||||||| ||||| ||||||| |||||| |||||||||
Sbjct 447077 TAGAAATACAATCCCGTTATAGCATAATTAGATTTTGGATTTTTAGGTTTTTCTTCAATA 447018
Query 38933 GAAATAGCTTGACGATTACTCCCAAATTCAACCACACCGAATCGTTCAGGATCTTTCACC 38992
|| | || || | | |||||||||| ||||| || | || ||||||||||||
Sbjct 447017 GATTTGACTACACCGTATTTGTCAAATTCAACAACACCAAACCTTTGCGGATCTTTCACC 446958
>seq2441
Length=2995558
Score = 102 bits (112), Expect = 8e-17
Identities = 263/397 (66%), Gaps = 4/397 (1%)
Strand=Plus/Plus
Query 38614 AGAAATCCACCCTTTTTTGAAAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACA 38673
||||| ||| || || || || || || |||||| ||| || || ||||||||||| |
Sbjct 456858 AGAAAGCCATCCCTTCTTAAAGGCTATACCTTCCAGGCAAGCGATTTTCAATCCTTGCCT 456917
Query 38674 GTTCTCAATAGTCTGCACGAATTGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTC 38733
|| || ||| | | ||| | || ||||| ||| | || |||||||| ||
Sbjct 456918 TTTTTCTATAACTTCAATGAAATTACTTGCTTCAGAAAGAGAATCATGAGTTCCTGTATC 456977
Query 38734 AAGCCAAGTAAATCCTCGTCCGAGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCT 38793
| ||| | ||| |||| || | | | |||| || | | |||| || | | |
Sbjct 456978 TAACCATGCAAAACCTCTACCAAAGATCTGTACTTTCAAATCATTCTCTTTTAAG-AATT 457036
Query 38794 GC-GATTGATATCAGTGATCTCCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCAC 38852
|| |||| | ||| ||||| ||||||||||| || ||||| || | | ||
Sbjct 457037 GCTGATTTACTGTAGTTATCTCAAGTTCTCCACGAGCAGAAGGCTGTATGTTTTTCGCTA 457096
Query 38853 GTTGAATAACAGAGTTATCATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGAT 38912
| |||||| ||| ||| ||||| | ||||| || ||||||| ||||||||||
Sbjct 457097 TATTAATAACTCGATTAGGATAAAAATAAAGTCCTGTTACTGCATAATTCGATTTAGGAT 457156
Query 38913 TTTCAGGTTTCTCTTCAATAGAAATAGCTTGACGATTACTCCCAAATTCAACCACACCGA 38972
||| ||||| || |||||| | | | | || || | ||||||| | |||||
Sbjct 457157 ATTCCGGTTTTTCCTCAATACTGAGAACATTACCATCTTTATCAAATTCGGCTACACCAT 457216
Query 38973 ATCGTTCAGGATCTTTCACCAAATACCCGAAAATACA 39009
||| ||| ||||| | ||| |||| || |||||||
Sbjct 457217 ATCTTTCCGGATCGCTGACCCAATAACC--AAATACA 457251
>seq2249
Length=266201
Score = 98.7 bits (108), Expect = 9e-16
Identities = 251/382 (66%), Gaps = 0/382 (0%)
Strand=Plus/Plus
Query 38634 AAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTCAATAGTCTGCACGA 38693
|||| |||||||| | || ||||| | || ||||| | || | || || | ||
Sbjct 209309 AAGCTATTTCTTCTATACAGGCAATATAAAAACCTTGTCGATTTTGTATGGTTTCTACAT 209368
Query 38694 ATTGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAATCCTCGTC 38753
| | ||| ||||| | ||| ||| || | ||||| || ||||| | |||||| || |
Sbjct 209369 AATTACCTGCTTCTAACAGGCTGTCGCAATTACCTGTATCGAGCCATGCAAATCCCCGCC 209428
Query 38754 CGAGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGATTGATATCAGTGATCT 38813
||| || | ||||| | || | ||||| || ||| ||| | ||| || ||||
Sbjct 209429 CGAAAAGCTGTACTTGCAGGTTTCCTTCTTCGAGATAGACTTTATTCAAATCGGTAATCT 209488
Query 38814 CCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAATAACAGAGTTATCAT 38873
| ||| || || | ||||| | | || ||| | ||| | || ||||
Sbjct 209489 CGTATTCGCCCCGAGGCGAAGGTTTCAGGGCTTTTGCTTTCTCGGCAACGGTCTTGTCAT 209548
Query 38874 AGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTTCTCTTCAATAG 38933
||||||| | || | |||||||| | ||||| || || | |||||| ||||| | |
Sbjct 209549 AGAAATAAAGTCCGGGTACAGCATAGTTCGATTTTGGCTTCTGAGGTTTTTCTTCCAACG 209608
Query 38934 AAATAGCTTGACGATTACTCCCAAATTCAACCACACCGAATCGTTCAGGATCTTTCACCA 38993
|||| ||| | || |||||||||| || || || | || ||||| ||
Sbjct 209609 AAATTACTTTATTGTTTTCATCAAATTCAACAACCCCATATGCTCTCGGGTCTTTTACAT 209668
Query 38994 AATACCCGAAAATACAAGCTCC 39015
|||| |||||||||||||||||
Sbjct 209669 AATAGCCGAAAATACAAGCTCC 209690
>seq179
Length=2312354
Score = 84.2 bits (92), Expect = 2e-11
Identities = 247/376 (66%), Gaps = 6/376 (2%)
Strand=Plus/Plus
Query 38634 AAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTCAATAGTCTGCACGA 38693
||||||||||||| | || | || ||||| |||| | | ||||| || | | |
Sbjct 131197 AAGCAATTTCTTCAATACATGATGCTTTTAATCCCTGACGGGTTTCAATCGTTTCTATAA 131256
Query 38694 A--TTGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAATCCTCG 38751
| |||| ||||| | || ||| | | || ||||| || | ||| | ||| ||||
Sbjct 131257 AATTTGA--AGCTTGTAACAAACTTTCCGGAGTGCCTGTATCTAACCATGCAAAACCTCT 131314
Query 38752 TCCGAG-AACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGATTGATATCAGTGA 38810
||| | ||||| | ||||| | | |||| ||| | | ||| | |||||| |
Sbjct 131315 TCCTAATAACTTT-ATATGTAATCTGTTTTCTTTCAGGAACATATTATTAAGATCAGTTA 131373
Query 38811 TCTCCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAATAACAGAGTTAT 38870
| || || ||||| | ||||| | | | | ||| || || ||| |||
Sbjct 131374 TTTCAAGCTCTCCCCTTTTTGAAGGCTTCAGATTTTTTGCTTTTTCTATCACATCATTAC 131433
Query 38871 CATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTTCTCTTCAA 38930
||| ||||| | ||||| |||||||||| |||||||| ||||||||||| ||||| |
Sbjct 131434 TATAAAAATATAGCCCTGTAACAGCATAATTAGATTTAGGTTTTTCAGGTTTTTCTTCTA 131493
Query 38931 TAGAAATAGCTTGACGATTACTCCCAAATTCAACCACACCGAATCGTTCAGGATCTTTCA 38990
| ||||| ||| | | | |||||| | || || ||| || |||||| |||
Sbjct 131494 TTGAAATCACTTTCCCTTCTTTATTAAATTCTGCAACCCCATATCTTTGAGGATCAGTCA 131553
Query 38991 CCAAATACCCGAAAAT 39006
| |||| || |||||
Sbjct 131554 CATAATAACCAAAAAT 131569
>seq95
Length=1800565
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 39245 GGTGTGGTGATGATTAAAATATCCTTAATGTCAGCCAACATCAATACCGATAAAGGGTAG 39304
||||||| ||| ||||||||||| |||| | || | ||||| | ||| |||||
Sbjct 1424920 GGTGTGGAGATAATTAAAATATCTCTAATACCCGCTAGCATCAGGGTTGCTAATGGGTAA 1424979
Query 39305 TAGATCATGGGTTTGTCATACACAGGGAGCAATTGCTTGCTCACACTGCGTGTTACCGGA 39364
|| ||||| ||||| ||||| ||||| | |||||| || |||| |||| |||
Sbjct 1424980 TAAATCATTGGTTTATCATAAACAGGCAACAATTGTTTAGAAACACCTAAGGTTATAGGA 1425039
Query 39365 TGAAGGCGGGTTCCACTTCCTCCCGCCAAAATAATACCTTT 39405
|| | | |||||| || || || ||||||||||||||
Sbjct 1425040 TGTAATCTAGTTCCAGAACCACCTGCTAAAATAATACCTTT 1425080
>seq1535
Length=1988416
Score = 82.4 bits (90), Expect = 7e-11
Identities = 103/139 (74%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 39744 ATGATCCTCAACAAAAAGCCAGTCTCGCACCTGGTCGCCTTTACCATACACCGGAATCTC 39803
||| || |||||| | |||||||| ||||| | ||| | |||||| ||||| | |
Sbjct 1358419 ATGGTCTTCAACATACAGCCAGTCACGCACATTAGTGCCATCACCATATACCGGCAATTT 1358478
Query 39804 TTTATTCGTCAAG-ATACTTGTGATGATTTTTGGGATCAGCTTTTCTGGATGTTGATAAG 39862
|||| | || || ||| || | || ||| |||||||||||||| ||| ||||| |
Sbjct 1358479 TTTAC-CTTCCAGTATATTTTTAATAATTAAAGGGATCAGCTTTTCCGGAAAATGATACG 1358537
Query 39863 GCCCAAAGTTATTGGAGCA 39881
| ||| |||||||||||||
Sbjct 1358538 GACCATAGTTATTGGAGCA 1358556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472483931839040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |