Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq1604 95.1 1e-14 seq4222 93.3 5e-14 seq2884 93.3 5e-14 seq1752 89.7 6e-13 seq1094 87.8 2e-12 seq179 84.2 2e-11 >seq1604 Length=351056 Score = 95.1 bits (104), Expect = 1e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 156612 CAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCT 156671 ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||| Sbjct 255407 CAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCT 255348 Query 156672 GTCTG 156676 | ||| Sbjct 255347 GACTG 255343 >seq4222 Length=21366 Score = 93.3 bits (102), Expect = 5e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 156614 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 156673 ||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||| Sbjct 17754 GTAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCACAGGTTCGAATCCTGT 17813 Query 156674 C 156674 | Sbjct 17814 C 17814 >seq2884 Length=40100 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 157689 ACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGA 157748 |||||| ||||||||| | ||||||||| ||||||||||||||| | | ||||||||||| Sbjct 19825 ACGGGGCGTAGCGCAGGT-GGTAGCGCGCTTGCTTTGGGAGCAAGATGCCGCAGGTTCGA 19883 Query 157749 ATCCTGTCACCCCGAC 157764 ||||||| ||||||| Sbjct 19884 GTCCTGTCGCCCCGAC 19899 >seq1752 Length=186427 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 156614 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTG 156672 ||||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||| Sbjct 14697 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCTG 14639 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 157690 CGGGGTGTAGCGCAGCTTGGT-AGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGA 157748 |||||||||||| || ||| | |||| ||||||||||||| ||||||||||||||| Sbjct 14823 CGGGGTGTAGCGTAGTCCGGTTATCGCGCCTGCTTTGGGAGCAGGAGGTCGCAGGTTCGA 14764 Query 157749 ATCCTGTCACCCCGAC 157764 |||||| ||||||||| Sbjct 14763 ATCCTGCCACCCCGAC 14748 >seq1094 Length=2708314 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 156606 ATGGGTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCG 156665 |||| ||||||||||| ||||||||||||| ||||||||| || ||||||||||||| Sbjct 606435 ATGGTCCAGTAGCTCAGCTGGATAGAGCAACGCCCTTCTAAGGCGTGGGTCACAGGTTCG 606494 Query 156666 AGTCCTGTCTG 156676 | ||||||||| Sbjct 606495 AATCCTGTCTG 606505 >seq179 Length=2312354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 157690 CGGGGTGTAGCGCAGCTTGGT-AGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGA 157748 ||||||||||||||| ||| ||||| ||||||||||||| |||||||||||||| Sbjct 479428 CGGGGTGTAGCGCAGTCCGGTTAGCGCACCTGCTTTGGGAGCAGGGGGTCGCAGGTTCGA 479369 Query 157749 ATCCTGTCACCCCGAC 157764 |||||| ||||||||| Sbjct 479368 ATCCTGCCACCCCGAC 479353 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/68 (88%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 156609 GGTC-AGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAG 156667 |||| |||||||||| ||||||||||||| ||||||||||| || |||| ||||||||| Sbjct 786961 GGTCTAGTAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCTCAGGTTCGAA 786902 Query 156668 TCCTGTCT 156675 ||||| || Sbjct 786901 TCCTGACT 786894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547577453142720