Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq211 98.7 5e-16 >seq211 Length=1809889 Score = 98.7 bits (108), Expect = 5e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 26081 CCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCA 26140 |||||||| || || |||| ||||| | ||| ||||| ||||||| || || | ||| Sbjct 908713 CCACCTTGGTCCACATATCGCGCAGTGTTGTTGTAAACTCTCAACATGGGTACAAGGCCA 908654 Query 26141 GTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGA 26200 | |||| ||| || || | | ||| | ||| || || | || ||| |||| ||||| Sbjct 908653 TTAGAAATTCCATTCGTACCAGCAATGTAGGAGCCAGTAGCCCTGATACAGTGAACATGA 908594 Query 26201 ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATT 26260 | ||| ||||||||||| ||||||| || ||||| | | | ||| || | || Sbjct 908593 AGACCAATTCCACCAGCAGATTTTGAGATTAAGGCACATTGTTTCAGTGTGTCATAGATC 908534 Query 26261 CCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAA 26299 || | ||||| || |||||||| | | ||||| ||| Sbjct 908533 CCCTCAATGCTGTCCTCTTTCATTGCCAGCAAAAAGCAA 908495 Score = 87.8 bits (96), Expect = 9e-13 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 25931 TCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCT 25990 ||||| || | ||| |||||||| | ||||| || | ||||| ||||| ||||||||| Sbjct 909846 TCCATGAAAAGATCAGGAATCCAGAGCGCATAGAACATGTCTCTGGCTCTAATTTCTTCT 909787 Query 25991 TTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAA 26049 || || ||| || | || || || | ||| ||||| | || | ||||||||||| || Sbjct 909786 TTGCCAGTGTTTTTCTTCAAG-TCAAGGAATTCAAACACGTCAGCATGCCATGGTTCCAA 909728 Query 26050 ATAGATAGCAAA 26061 ||||| |||||| Sbjct 909727 ATAGACAGCAAA 909716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252963543331400