Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq179 212 7e-50 seq2330 150 2e-31 seq1702 145 9e-30 seq2441 122 1e-22 seq1535 118 1e-21 seq76 118 1e-21 seq788 111 2e-19 seq1232 107 2e-18 seq126 105 8e-18 seq875 91.5 2e-13 >seq179 Length=2312354 Score = 212 bits (234), Expect = 7e-50 Identities = 369/524 (70%), Gaps = 16/524 (3%) Strand=Plus/Plus Query 138171 AGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGA-ATACA 138229 ||||||| |||||||| |||||||| ||||||||||| ||||| || || ||| | || Sbjct 1073789 AGATGTTCTGCTACACATATAGGACCAACGCCAGGACCACCACCACCGTGAGGACCTGCA 1073848 Query 138230 GAATGTCTTATGTAAATTTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTA 138288 || || ||||||||||||| ||| ||||| ||||| || ||| | || |||| | Sbjct 1073849 -AAAGTTTTATGTAAATTTAAATGGCATACGTCTGCTCCGATA-AATCCGGGATTTGTAA 1073906 Query 138289 GACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAA 138348 | || ||||| ||||| | |||||||| || | |||||| || || || |||||||||| Sbjct 1073907 GTCCAACCTGGGCATTCATGTTTGCACCGTCCATATATACTTGTCCTCCGTTGTCATGAA 1073966 Query 138349 CGATCTTACATATC-TGTCTGATGT--TTGTTTCAAATACACCATGAGTCGATGGATATG 138405 | || || |||| | ||| || | | ||||||| || ||||| || || ||||||| Sbjct 1073967 CTATTTT---TATCATCTCTAATATCCTGCTTTCAAAAACTCCATGGGTAGACGGATATG 1074023 Query 138406 TAATCATAATACATGAGAGTTCAAATGTA--TTCATGATTGCTTTCTTCTCTAGATCTTT 138463 | ||||| || | || | | | || |||| | ||||| || | ||||| Sbjct 1074024 TTATCATTGTAGCAGCAAGCTTATCTTTATGTTCA--GTAGCTTTTGCCTTGAAATCTTC 1074081 Query 138464 GATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGAC 138523 | || || || || | ||||||| || ||| | || | || ||| |||||||| || Sbjct 1074082 AACATCGATATTTCCTTTTTCATCACTTTTTACAACAACTATTTCCATGCCTGCCATAAC 1074141 Query 138524 TGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATC 138583 |||||| |||||||| |||||||| || || || ||||| |||| ||| | | | Sbjct 1074142 TGCACTTGCAGGATTTGTTCCATGGGCAGATGAAGGGATCAGGCATATATTACGATGAGA 1074201 Query 138584 ATCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACC-CTGTG 138642 ||||||| | || ||||||| || ||| | | | ||| | | || || ||| | Sbjct 1074202 ATCTCCTCTTGATTTATGATATTCTCTGATAACCATTAATCCGGTGTGTTCGCCACTG-G 1074260 Query 138643 ATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATA 138686 ||||| |||||||||| ||| | | |||| ||||| ||| Sbjct 1074261 CTCCTGAATTAGGTTGTAGTGAAGTTGCTGCAAATCCTGTTATA 1074304 >seq2330 Length=1066040 Score = 150 bits (166), Expect = 2e-31 Identities = 185/253 (73%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||| | ||||||| ||||||| ||||| ||| | || || || ||||| ||||| Sbjct 690752 AAATGGAATAAGATGTTCCGCTACACAGATAGGGCCTTCACCCGGTCCACCACCACCATG 690811 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGG 138280 |||||| ||||| ||||| | ||| || ||||| |||||||||||| | | || Sbjct 690812 AGGAATAGCAAATGTTTTATGCAGATTGAGGTGACAAACATCTGCACCAATATAGCCGGG 690871 Query 138281 TTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATT 138340 || | ||| || ||||| ||||| | |||||| ||||| | |||||| || || || | Sbjct 690872 GTTGGTTAGTCCGACCTGCGCATTCATATTTGCTCCATCCATATATACTTGTCCTCCGTG 690931 Query 138341 GTCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGG 138400 | || || |||||||| || | | ||| | | | || || | ||||||||| || || Sbjct 690932 TTGGTGTACAATCTTACACATTTCCCGGATTTCTTTCTCGAAGATACCATGAGTAGACGG 690991 Query 138401 ATATGTAATCATA 138413 ||| || |||||| Sbjct 690992 ATAGGTGATCATA 691004 Score = 82.4 bits (90), Expect = 9e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 139863 GCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGTA 139922 ||||| || | || |||||||||||||||| ||| ||| | || || || | ||| Sbjct 692496 GCCTCAGCACCAGCCGTTGCTTCATCTAATAAAGAACAGTTGGATAACGGCAAAGCGGTA 692555 Query 139923 AGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTCA 139982 ||||| | | | || || |||| | | ||||||||| | || || || || || Sbjct 692556 AGTTCACTCACCATTGTCTGAAAATTCATCAGAGCTTCCAAACGCCCTTGCGAAATTTCC 692615 Query 139983 GCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAA 140025 || |||||||| || || ||||| |||||| ||| ||||||| Sbjct 692616 GCCTGATAGGGTGTATATGATGTATACCAAACAGGGTTCTCAA 692658 >seq1702 Length=707479 Score = 145 bits (160), Expect = 9e-30 Identities = 179/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 138173 ATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAA 138232 ||||| |||||||| ||||| ||| |||| ||||| || || || || || || || Sbjct 622012 ATGTTCTGCTACACATATAGGTCCTTCGCCCGGACCGCCGCCGCCGTGAGGGATGGCAAA 621953 Query 138233 TGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCA-CATGGTTTTGCTAGAC 138291 ||||||||||||||| || || || || || ||||| || | | || || | || | Sbjct 621952 TGTCTTATGTAAATTGAGGTGGCAAACGTCAGCACC-TATAAAGCCCGGATTGGTAAGGC 621894 Query 138292 CTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGA 138351 ||||||||||||| | |||||| || || | ||||||||| |||||| | ||| || | Sbjct 621893 CTACCTGTGCATTCATATTTGCCCCGTCCATATATACCTGTCCACCAAATTGATGTACTA 621834 Query 138352 TCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCA 138411 ||| ||| || | ||||| | | |||| || | |||||| || || || || ||||||| Sbjct 621833 TCTCACACATTTTCCTGATCTCTTTTTCGAAAATACCATGTGTAGAAGGGTAAGTAATCA 621774 Query 138412 TA 138413 || Sbjct 621773 TA 621772 >seq2441 Length=2995558 Score = 122 bits (134), Expect = 1e-22 Identities = 178/248 (72%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 138169 TGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATAC 138228 ||||||||| ||||||| ||||| ||||| || || || || || ||||||||| | Sbjct 368530 TGAGATGTTCGGCTACACATATAGGCCCTACACCCGGGCCGCCTCCGCCATGTGGAGAAG 368471 Query 138229 AGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTA 138288 ||||| |||||||| || || |||||||| ||||| ||| | | || || | | Sbjct 368470 CAAATGTTTTATGTAAGTTCAGGTGACATACGTCTGCTCCAATGAATCCGGGGTTAGTCA 368411 Query 138289 GACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCA---TTGTC-A 138344 | |||||||| ||||| | ||| |||||||| | |||||||| | || |||| | Sbjct 368410 GTCCTACCTGCGCATTCATATTGGCACCATCCATGTATACCTGTGCTCCGCACTTGTGTA 368351 Query 138345 TGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATAT 138404 |||| ||| ||| || | | ||| | ||||| || | || ||||| || || ||| Sbjct 368350 TGAA--ATC--ACAAATTTCTACGATTTCAGTTTCGAAAATGCCGTGAGTGGAAGGGTAT 368295 Query 138405 GTAATCAT 138412 |||||||| Sbjct 368294 GTAATCAT 368287 >seq1535 Length=1988416 Score = 118 bits (130), Expect = 1e-21 Identities = 180/254 (71%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 ||| ||| | | |||| |||||| | ||||| || || || || || ||||| || || Sbjct 337278 AAAAGGTTTTAAATGTGATGCTACGCATATAGGTCCAACACCCGGTCCACCACCACCGTG 337337 Query 138221 TGGA-ATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATG 138279 ||| || || ||||||||||||| ||||| |||||||||||| || ||| | | | | Sbjct 337338 AGGAGATGCA-AATGTCTTATGTAGATTTAAATGACATACATCAGCTCCAATGACTCCCG 337396 Query 138280 GTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCAT 138339 | || | || ||| ||||| ||||| | || || ||||| | |||| || ||||| Sbjct 337397 GATTGGTTAAACCCACCTGAGCATTCATGTTGGCGCCATCCATGTATATTTGTCCACCGC 337456 Query 138340 TGTCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATG 138399 ||||| || | ||| || | | |||| | | |||||| | || ||||| || | Sbjct 337457 AACTATGAATAATATCACACATTTTTTTGATATCAGCTTCAAAAATTCCGTGAGTAGAAG 337516 Query 138400 GATATGTAATCATA 138413 | ||||| |||||| Sbjct 337517 GGTATGTTATCATA 337530 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 139863 GCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGTA 139922 || || || || ||||| |||||||| |||| ||| ||||| || ||| | |||||| Sbjct 339004 GCTTCAGCAGCAGCAGTAGCTTCATCCAATAAAGAGCAGTTTGTTAGTGGAAGTCCTGTT 339063 Query 139923 AGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTCA 139982 || || | | || || | || ||||||||||| || | ||||||||| || ||| Sbjct 339064 AGATCACAAACCATTGTCTGAAAGTTCAATAAAGCTTCTAAACGTCCCTGAGAAATTTCA 339123 Query 139983 GCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCG 140035 || || ||||||||||| || || ||||| || || |||| ||||| || Sbjct 339124 GCCTGGTAGGGAGTGTATGAGGTATACCAGACGGGGTTTTCAAATACGTTACG 339176 >seq76 Length=2859269 Score = 118 bits (130), Expect = 1e-21 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 |||||||| | ||||| | | ||||||||||||| |||| ||| ||||| || |||||| Sbjct 1828138 CCATGATAAACAGCATACATTGCAGACATATTTGCTAGCAATGCCTGTGCAGTACAGATG 1828079 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAA 139384 || ||||||||||| || ||||| |||||||| ||||| ||||||| ||| || Sbjct 1828078 TTGCTGGTTGCTTTATCCCTTCTGATATGCTGTTCTCTTGTTTGTAATGCCAA 1828026 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||||||||| | || ||||| || || ||||| || || ||||||||||| || Sbjct 1862375 ACTCCAATAGGACCCATTCCTGGACCACCCCCACCATGAGGTATGCAGAATGTCTTGTGA 1862316 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | ||| |||||| | ||||| | ||||| || | ||| | ||||| || ||| Sbjct 1862315 AGATTCAGATGAGAAACATCAGATCCATAATCTCCTGGCCGACACAACCCTACTTGGGCA 1862256 Query 138303 TTTAGATTTGCACCATCGAGATATACCT 138330 || | ||| |||||||| || || |||| Sbjct 1862255 TTCATATTAGCACCATCCAGGTAGACCT 1862228 >seq788 Length=584067 Score = 111 bits (122), Expect = 2e-19 Identities = 177/252 (70%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 139870 CTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGTAAGTTCTG 139929 |||| || || ||||||||||||| ||| || ||||| || ||||| || | || | Sbjct 331473 CTGCCGCTGTAGCTTCATCTAATAAAGAAGCATTTGCGATGGGTAAAGAAGTTAAATCCG 331414 Query 139930 TGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTCAGCTTGAT 139989 || | || || |||| || ||||||||||| | || ||||| || || || |||| Sbjct 331413 AAATCATTGTCTGAAAATTCAACAAAGCTTCCAAACGACCTTGAGAAATTTCCGCCTGAT 331354 Query 139990 AGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTGTATGACTGGGG 140049 | |||||||||| ||||||||| | | ||| |||| |||||||| |||| || | | Sbjct 331353 AAGGAGTGTAAGCTGTGTACCAGCCTGCATTTTCAAAAACGTTTCTTAGTATTACCGATG 331294 Query 140050 GTGTAATGGTTCCATAGTATCCTTGACCTA--TAAGACTAGGTTTTACTTTGTTTGCTTT 140107 | || || || ||| || || |||| |||| || | | || ||||||| | Sbjct 331293 GAGTTATCGTATTATAATACCCCATTCCTATGTAAGTCTTG--TATATTTTGTTTTTTGA 331236 Query 140108 TGCTATATTTTT 140119 ||| || ||||| Sbjct 331235 TGCAATGTTTTT 331224 >seq1232 Length=396718 Score = 107 bits (118), Expect = 2e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 139863 GCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGTA 139922 || ||||| ||||| ||||||||||| | || ||| || | | ||||||| ||||| Sbjct 29106 GCTTCTGCAGCTGCTGTTGCTTCATCCAGTAAAGAACAATTGGTCAATGGTAATGCTGTA 29047 Query 139923 AGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTCA 139982 || || ||| | || || |||| | ||||| || ||||| || || ||||| || Sbjct 29046 AGATCACTGACCATTGTCTGAAAATTCAGCAAAGCCTCTAATCTGCCTTGCGATATTTCT 28987 Query 139983 GCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTC 140034 || ||||| ||||| |||||||| ||||| |||||| |||| ||| |||| Sbjct 28986 GCCTGATATGGAGTATAAGATGTATACCAGACAGGATTTTCAAAAACATTTC 28935 >seq126 Length=3533043 Score = 105 bits (116), Expect = 8e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 139862 TGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGT 139921 ||| ||||| || || || ||||| || |||| ||| |||||| | || | |||||| Sbjct 166565 TGCTTCTGCAGCAGCTGTAGCTTCGTCCAATAAAGAACAGTTTGCCAAGGGAAGTCCTGT 166506 Query 139922 AAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTC 139981 | || | | | |||||| |||| | || ||||||| | || ||||| || || Sbjct 166505 TAAATCACTTACCATTGTTTGGAAATTAAGCAAGGCTTCCAGACGGCCTTGAGAAATTTC 166446 Query 139982 AGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTC 140034 ||||||||||||||||||||| |||||||| ||||| |||| ||| |||| Sbjct 166445 AGCTTGATAGGGAGTGTAAGAAGTGTACCATGCTGGATTTTCAAAAACATTTC 166393 >seq875 Length=1099013 Score = 91.5 bits (100), Expect = 2e-13 Identities = 205/308 (67%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 139248 GCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCG 139307 |||||| | | || || || ||||| || ||| | || || || || | ||| |||| Sbjct 908205 GCTATATCTTTTAAACCTTCAGCACCGTGGTATACAGCGTAAAAACCGGCCATTGTTGCT 908146 Query 139308 AGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCT 139367 | || || || ||||| || || || || ||||| || | | | || || || || Sbjct 908145 AACAAAGCCTGGGCTGTACATATATTTGAAGTCGCTTTTTCACGTTTGATGTGTTGTTCG 908086 Query 139368 CTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACA 139427 | |||||||| ||||||||||| || | || || | || || ||||| Sbjct 908085 CGGGTTTGTAGGGCTAATCTGTAAGCGGCATGTCCGTAAGCATCTTTGGAGATACCTATG 908026 Query 139428 ATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGA 139487 ||||| || ||||| | ||||| | ||| |||||||||| | | ||| |||| Sbjct 908025 ATTCTTCCGGGTATAGCGCGTTTATATTCATCTTTTGTTGCAAAATAACCGGCAGAAGGA 907966 Query 139488 CCTCCGTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATCAAATCCC 139547 ||||| || ||| ||||||||||| | ||| |||| || | ||| ||| ||| Sbjct 907965 CCTCCATAAAACATCGGAATACCAAAGCGTTGGCTACTTCCGAATACAACATCTGCCCCC 907906 Query 139548 CACTCACC 139555 || ||||| Sbjct 907905 CATTCACC 907898 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 139863 GCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGTA 139922 || || || || ||||||||||||||||| | ||| ||||| | |||| |||| Sbjct 907581 GCTTCAGCAGCAGCAGTTGCTTCATCTAACAAAGAACAGTTTGTAAGAGGTAGAGCTGTT 907522 Query 139923 AGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTCA 139982 || || ||| | || ||| | || | ||| ||||| || | ||||| || | ||| Sbjct 907521 AGGTCACAGATAACAGTCTGGAAGTTAAGTAATGCTTCTAAGCGCCCCTGGGAAACTTCA 907462 Query 139983 GCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTGTAT 140041 || ||||| || || || ||||| |||||| |||||| |||| || || || || || Sbjct 907461 GCCTGATAAGGTGTATATGATGTATACCAAACAGGATTTTCAAATACATTGCGTTGAAT 907403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578818968395840