Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq15409 127 2e-24 seq1094 102 1e-16 seq211 98.7 1e-15 seq95 91.5 2e-13 seq179 84.2 3e-11 >seq15409 Length=3682 Score = 127 bits (140), Expect = 2e-24 Identities = 312/464 (67%), Gaps = 18/464 (4%) Strand=Plus/Plus Query 175288 CCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCC 175347 |||| |||| || || | ||| ||| ||||| || || ||||| || ||||| ||| Sbjct 2952 CCCCACGGCGTGCTGCTGGTGGGCCCGCCGGGTACCGGCAAAACCCTGCTGGCCCGCGCC 3011 Query 175348 ATCGCGGGTGAATCAAATGT-CCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGAT 175406 ||||| || | || ||| || || | | ||| | | | |||||||| ||||| Sbjct 3012 TGTGCGGGCGAGGCGGGCGTACCCTTTTATTCCAT-CTCCGGCTCCAACTTTGTAGAGAT 3070 Query 175407 GTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCA 175466 || ||| || ||||| |||| | || || ||| | ||||| | || | ||| || Sbjct 3071 GTATGTGGGCGTGGGCGCCAGCCGCGTGCGGGATTTGTTTGACAAAGC--GAAAAAGACA 3128 Query 175467 AC--CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG- 175523 | | ||||| ||||| ||||| || ||||||||||||||| || ||| |||| || Sbjct 3129 GCGCCCTGTATCGTCTTTATTGACGAAATTGATGCGGTGGGCCGCCAGCGCGGCGCGGGC 3188 Query 175524 --TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATG 175581 ||| | | || | ||||| | || || || | || ||||| || |||||| Sbjct 3189 CTTGG--CGGCGGC-CACGACGAACGTGAGCAGACCCTGAACCAACTGCTGGTGGAGATG 3245 Query 175582 GATGGCTTTGA---CAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGAT 175638 || |||||||| ||| ||| ||| || | || |||| ||||| || || | |||| Sbjct 3246 GACGGCTTTGACGGCAACGAG---GGCGTTATCGTGGTTGCCGCCACCAACCGGGCGGAT 3302 Query 175639 ATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATCCAAGTGGGTCTT 175698 || | || | ||||| || ||||| || || ||||| ||| || | | ||||| || Sbjct 3303 ATTTTGGACAAAGCCCTGCTGCGCCCTGGCCGGTTTGACCGCCAGGTGTATGTGGGCCTG 3362 Query 175699 CCAAGTGTGCGAGGTCGCAAGAAGATTTTGGGAGTCCATGCCCG 175742 || ||| | || | || |||||||| || ||| |||| Sbjct 3363 CCGGATGTAAGGGGCAGGGAGGAGATTTTGCAGGTGCATACCCG 3406 >seq1094 Length=2708314 Score = 102 bits (112), Expect = 1e-16 Identities = 256/384 (67%), Gaps = 10/384 (3%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || ||||| ||||| | ||||| ||| | || || ||| | || || || || Sbjct 198801 CCGGGAACAGGAAAAACCCTGATTGCCCGTGCCGTAGCAGGCGAAGCGAAAGTTCCGTTT 198742 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGC--CAAAAGGG 175432 || || | || | ||||| |||||||||| ||| |||| || | |||| Sbjct 198741 TTCTCTATATCCGGTTCAGAGTTTGTACAGATGTTTGTCGGTATGGGAGCAGCCAAAG-- 198684 Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||||| || ||| | || ||||||| ||| || || ||||||||||||| | Sbjct 198683 TACGCGACCTGTTTAAGCAGGCTGGCGAAAAAGCACCTTGCATCATCTTCATTGATGAAA 198624 Query 175493 TTGATGCGGTGGGCAAGCAACG---CAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549 | ||||| | |||||| |||| | ||| ||| | || | ||||| || | | Sbjct 198623 TAGATGCCATTGGCAAGAAACGTGATAACGC-CTTGGGAGGC--GGTAATGATGAACGTG 198567 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTG 175609 ||||||| | || ||||| || ||||| |||||||| || ||| | || | | Sbjct 198566 AACAAACCCTGAACCAACTCCTGACCGAAATGGATGGGTTCGACGGGCGCAAAGGTGTAG 198507 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTC 175669 || || |||| || || || || ||| | || || | ||| | || |||||||| | Sbjct 198506 TGATTCTTGCTGCAACCAACCGTCCGGAAAGTCTGGACAAAGCCTTGCTACGCCCGGGAC 198447 Query 175670 GTTTTGATCGCAAGATCCAAGTGG 175693 |||| || ||| ||| ||| ||| Sbjct 198446 GTTTCGACCGCCGGATACAAATGG 198423 >seq211 Length=1809889 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/193 (73%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 76409 CTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACG--ACTGGGATGTTCTCA 76466 ||||||| ||| |||||| || || | ||||| | | || | |||||| || ||| | Sbjct 922411 CTTCAGTATGACATGTGG-AATGTCACACCAA-CAGACCTGTGGGACTGGGCTGATCTGA 922468 Query 76467 AGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGCACCAATGCCAAC 76524 || |||| || || | ||| |||| ||| ||||| | | || || ||||| || Sbjct 922469 AGAAACGTATTGCACAGCATGGTGTTCGCAAC--TCTTTGCTTCTTGCTCCCATGCCTAC 922526 Query 76525 AGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACAT 76584 || ||||| || ||||| ||||| || ||||||| ||||| ||||||||||| ||||| Sbjct 922527 GGCTTCCACTGCTCAAATATTGGGAAACAATGAATCTTTTGAGCCATACACAACGAACAT 922586 Query 76585 CTACCTGAGAAGA 76597 |||| |||||| Sbjct 922587 CTACTCAAGAAGA 922599 >seq95 Length=1800565 Score = 91.5 bits (100), Expect = 2e-13 Identities = 270/405 (67%), Gaps = 16/405 (4%) Strand=Plus/Minus Query 177562 ACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCT 177621 ||||||| ||| || || | | |||| || || | ||| | || |||| | ||| Sbjct 669319 ACAAACTCCCTAACCGAATACTGCACCCCAGTGGCAATTACAAAATCCTCAGGTTGCTCT 669260 Query 177622 TGTTGAAGCATGAGCCACATGGCTTCA--ACATAGTCCTTGGCATGACCCCAGTCTCTGG 177679 ||||| | ||| | ||| | || || | ||| || |||||||| ||||| || | | Sbjct 669259 TGTTGCAACATTAACCA--TTGCATCCGTATATAATCTTTGGCATGCCCCCAATCGC--G 669204 Query 177680 CA--GCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCA-CCTTTCACAAT-TTGTTTG 177735 || ||||| || ||||| || | | | | | | ||| | |||| | |||| ||| | Sbjct 669203 CAATGCGTTAAGATTACCAAGGTATAAGCATTGT-TCTAAACCTTGCGCAATATTGGCTA 669145 Query 177736 ACGCCATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTG 177795 | ||| ||| || || || |||||| |||| || | |||||||| ||||| Sbjct 669144 AA-CCACGAGTTATTTTACGAGTCACAAAGGTCTCACCACGGCGTGGTGATTCATGGTTA 669086 Query 177796 AAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAG 177855 || | || || ||||||||||||||||||| ||| ||||| || | | ||| Sbjct 669085 AACAAAATCCCATTACAGGCATACATACCATAGGCTTCACGGTAGTTAACGGTAATCCAA 669026 Query 177856 TGAGCGGCCAATTTGGAGACGC--CATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAG 177913 | ||| | ||| || ||| |||| || |||||||| || ||||| ||| Sbjct 669025 TAAGCATAAAGTTT--AGCCGCTGCATAAGGCGAACGTGGGTAAAAAGGTGTGGTCTCTT 668968 Query 177914 TTTGTGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGG 177958 ||||||| |||||| ||||| |||| | | || || || |||| Sbjct 668967 TTTGTGGTGTTTCTTGGACTAAACCATAGAGTTCAGAGGTAGAGG 668923 >seq179 Length=2312354 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/203 (70%), Gaps = 7/203 (3%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGC--CAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 ||||| | |||||||| || |||| || | |||| | | ||||| ||| || | Sbjct 486151 TTTGTTCAAATGTTTGTCGGAATGGGAGCGGCCAAAG--TCAGGGATCTGTTTAAACAAG 486208 Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAAC 175513 || ||||||| || ||||| || || |||||||| || ||| | | || || ||| Sbjct 486209 CCAGCGAAAAAGCTCCGTGTATAGTTTTTATTGATGAAATAGATACTATAGGAAAAAAAC 486268 Query 175514 GC---AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTAC 175570 | | ||| ||| | || ||||||||| || |||||||| | |||||||||| Sbjct 486269 GTGATAATGCTTTTGGAACAGGAGGAAATGACGAAAGGGAACAAACTCTGAATCAACTAC 486328 Query 175571 TCACCGAGATGGATGGCTTTGAC 175593 | || || |||||||| |||||| Sbjct 486329 TTACTGAAATGGATGGATTTGAC 486351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596384723080960