Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq1991 104 3e-17 seq3496 100 3e-16 seq1690 91.5 2e-13 seq385 86.0 7e-12 seq95 84.2 2e-11 seq1604 82.4 9e-11 >seq1991 Length=147557 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 18006 CTCGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTC 18064 |||||||||||||||||||||| |||||| ||||||||||||||||| |||| |||||| Sbjct 145190 CTCGGGGAATTAGCTCAGTTGGCTAGAGCACCTGCTTTGCAAGCAGGGGGTCATCGGTTC 145131 Query 18065 GAGTCCGCTATTCTCCA 18081 || |||| ||||||||| Sbjct 145130 GACTCCGATATTCTCCA 145114 >seq3496 Length=15201 Score = 100 bits (110), Expect = 3e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 18008 CGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 18066 |||||||||||||||||||| |||||| ||||||||||||||||| |||| |||||||| Sbjct 7699 CGGGGAATTAGCTCAGTTGGCTAGAGCACCTGCTTTGCAAGCAGGGGGTCATCGGTTCGA 7640 Query 18067 GTCCGCTATTCTCCA 18081 |||| ||||||||| Sbjct 7639 CTCCGATATTCTCCA 7625 >seq1690 Length=1574822 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18009 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 18068 ||||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||| | Sbjct 1439856 GGGGATTTAGCTCAGTTGGTAGAGCACCTGCCTTGCAAGCAGGATGTCAGGAGTTCGACT 1439797 Query 18069 CCGCTATTCTCCA 18081 | ||| |||||| Sbjct 1439796 CTCCTAATCTCCA 1439784 >seq385 Length=1145925 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 18009 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 18067 ||||||||||||||| ||| |||||||||||| ||||| |||||| |||| ||||||| Sbjct 504578 GGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAAGGGTTCGAC 504637 Query 18068 TCCGCTATTCTCCA 18081 ||| ||||||||| Sbjct 504638 TCCCTTATTCTCCA 504651 >seq95 Length=1800565 Score = 84.2 bits (92), Expect = 2e-11 Identities = 56/61 (92%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 161245 GTAGCTCAGC-GGATAGAGCAACCGCCTTCTAAGCGGTTGGTCGCAGGTTCAAATCCTGC 161303 ||||||||| |||||||||| ||||||||||||||| ||||||||||||| |||||||| Sbjct 1258625 GTAGCTCAGTTGGATAGAGCACCCGCCTTCTAAGCGGGTGGTCGCAGGTTCGAATCCTGC 1258684 Query 161304 C 161304 | Sbjct 1258685 C 1258685 >seq1604 Length=351056 Score = 82.4 bits (90), Expect = 9e-11 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 161243 CAGTAGCTCAGC-GGATAGAGCAACCGCCTTCTAAGCGGTTGGTCGCAGGTTCAAATCCT 161301 |||||||||||| |||||||||||| ||||||||||| || |||| ||||||| |||||| Sbjct 255407 CAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCT 255348 Query 161302 GCCTG 161306 | ||| Sbjct 255347 GACTG 255343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561074069244800