Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq242 136 6e-27 seq2315 127 3e-24 seq783 125 1e-23 seq3439 113 7e-20 seq39 107 3e-18 seq1206 91.5 2e-13 seq123 87.8 3e-12 >seq242 Length=1788442 Score = 136 bits (150), Expect = 6e-27 Identities = 140/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| ||||| | ||||| || || || ||||| ||||| | || || |||| || Sbjct 1569776 AATGCAGATATTCGTGAAAACTTTAACGGGTAAAACAATTACCCTCGAGGTTGAAGCCTC 1569835 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| ||| |||||| ||||| ||||| || |||||||| ||||| || || Sbjct 1569836 TGATACTATTGAAAATGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCTCCTGATCA 1569895 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| |||||||||| ||| || |||||||| || ||| |||| | || |||||||| Sbjct 1569896 ACAGAGATTGATTTTTGCTGGAAAGCAGCTAGAGGATGGACGAACACTCTCTGATTATAA 1569955 Query 156002 TAT 156004 ||| Sbjct 1569956 TAT 1569958 >seq2315 Length=138946 Score = 127 bits (140), Expect = 3e-24 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || ||||||||||||||||| || || ||||| ||| || Sbjct 27130 AATGCAAATCTTCGTTAAGACTTTGACTGGAAAAACTATCACCTTGGAAGTGGAACCATC 27189 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| || ||| || |||||||| || ||||| || ||||| || || Sbjct 27190 TGATACAATTGAAAATGTAAAAGCAAAGATACAAGACAAGGAAGGTATTCCTCCTGATCA 27249 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||| | || | ||| ||||||||||| || ||| | | || | || ||||| || Sbjct 27250 GCAAAGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACACTGTCTGATTACAA 27309 Query 156002 TATATCCAAAGAGG 156015 ||| |||| ||| Sbjct 27310 CATA--CAAAAAGG 27321 >seq783 Length=580412 Score = 125 bits (138), Expect = 1e-23 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | ||||| | || || ||||||||||| || |||||||| | ||| Sbjct 390128 AATGCAGATTTTTGTAAAAACTCTTACCGGGAAAACTATTACTTTGGAAGTCGAGGCTTC 390187 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || || || ||| ||||| || || || |||||||| || ||||| || Sbjct 390188 GGATACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGACCA 390247 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| |||||||| | ||| || ||||||||||| || | ||||| | |||||||| || Sbjct 390248 ACAGAGATTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCAGATTACAA 390307 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || ||||| | || || ||| | ||| | ||| Sbjct 390308 CATTCAGAAAGAATCTACACTCCATCTTGTGCTGAGA 390344 >seq3439 Length=31086 Score = 113 bits (124), Expect = 7e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 110988 CCAATTATAAAATAATTTTTTCCCGTCTTTACACAACTTCGTAGCGTTAAAGTAACCTGT 111047 |||||||| ||| |||||| || | | ||| | ||||||||| || ||||| || || Sbjct 10462 CCAATTATCAAAACGTTTTTTACCAGCCTGACATAGCTTCGTAGCATTGAAGTATCCAGT 10521 Query 111048 ATTTTTATCTATTATTAGTCTAAAATCTCCAAATAGACCATAATGAAATGAATCTTTTAT 111107 | ||||||||| | ||| ||||||||||||| |||||||| || |||||| || Sbjct 10522 AGATTTATCTATGACCAGTTTAAAATCTCCAAAGAGACCATACCAGTATTGATCTTTGAT 10581 Query 111108 CTGTTCATAACATATATCATTTAGAGACAT 111137 ||||||||||||| ||| || ||||| || Sbjct 10582 TTGTTCATAACATACATCGTTAAGAGATAT 10611 Score = 95.1 bits (104), Expect = 2e-14 Identities = 101/133 (76%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 76259 TCTCTAATCGACATATGTTATGAACATATTAAAGATTCTTATTATTATGGTCTTTTTGGT 76318 ||||| | ||| ||||||||||||| || |||||| || | |||||||| ||||| Sbjct 10608 TCTCTTAACGATGTATGTTATGAACAAATCAAAGATCAATACTGGTATGGTCTCTTTGGA 10549 Query 76319 GATTTTAAACTTATAATAGATaaaaaaaCAGGTTATTTTAATGCAACGAAACTTTGTAAT 76378 ||||||||||| | ||||||||| || || || || ||||| ||||| || ||| | Sbjct 10548 GATTTTAAACTGGTCATAGATAAATCTACTGGATACTTCAATGCTACGAAGCTATGTCA- 10490 Query 76379 TTAGCTGGTAAAA 76391 |||||||||| Sbjct 10489 --GGCTGGTAAAA 10479 >seq39 Length=3240425 Score = 107 bits (118), Expect = 3e-18 Identities = 147/202 (73%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 2220 TTATTTATAACATAATTTATTAAATTTTTAGAT-TTATCTAATGATTTCCAATGTATATA 2278 || ||||||| || || || || || || | | || |||||| |||| | | || | Sbjct 2060272 TTCTTTATAA--TACTTGAT-AAGTTGTTTGCTGTTTTCTAATCGCATCCAGTTTCTAAA 2060328 Query 2279 TCTTTTACCACCTAAATTACATAATTTTGTCGCATTAAAACAACCTGtttttttATCTAT 2338 || |||||| || || ||||||||| || ||||||||||| || || |||||||| Sbjct 2060329 TCGTTTACCGCCACTATGACATAATTTAGTAGCATTAAAACATCCAGTCGACTTATCTAT 2060388 Query 2339 TATAAGTTTAAAATCACCAAAAAGACCATAATAATAAGAATCTTTAATATGTTCATAACA 2398 | | |||||||| ||||| |||||||| |||| ||||| || ||||||||||| Sbjct 2060389 AACCAAATTAAAATCTCCAAAGAGACCATACCAATACTGGTCTTTGATTTGTTCATAACA 2060448 Query 2399 TATGTCGATTAGAGACAttttt 2420 || | | | |||||||| ||| Sbjct 2060449 TACATTGTTGAGAGACATGTTT 2060470 Score = 100 bits (110), Expect = 4e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 226337 GTCTCTAATCGACATATGTTATGAACATATTAAAGATTCTTATTATTATGGTCTTTTTGG 226396 |||||| | | | ||||||||||||| || ||||| |||| |||||||| ||||| Sbjct 2060464 GTCTCTCAACAATGTATGTTATGAACAAATCAAAGACCAGTATTGGTATGGTCTCTTTGG 2060405 Query 226397 TGATTTTAAACTTATAATAGATaaaaaaaCAGGTTGTTTTAATGCGACAAAATTATGTAA 226456 |||||||| | | |||||||| || || ||||||||||| || ||||||||| | Sbjct 2060404 AGATTTTAATTTGGTTATAGATAAGTCGACTGGATGTTTTAATGCTACTAAATTATGTCA 2060345 Query 226457 TTTAGGTGGTAAAAGATATATACATTGGAAATCATTAGATAA-ATCTAAAAATTTAATAA 226515 | || |||||| ||| || | | |||| |||||| || | | || || || || | Sbjct 2060344 TAGTGGCGGTAAACGATTTAGAAACTGGATGCGATTAGAAAACAGCAAACAACTT-ATCA 2060286 Query 226516 ATTATGTTATAAATAA 226531 | || ||||||| || Sbjct 2060285 AGTA--TTATAAAGAA 2060272 Score = 93.3 bits (102), Expect = 6e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 75179 TATGGTCTTTTTGGTGATTTTAAACTAGTAATCGATAAAACTACTGGTTATTTTAATGCA 75238 |||||||| ||||| |||||||| | || || ||||| | ||||| | ||||||||| Sbjct 2060418 TATGGTCTCTTTGGAGATTTTAATTTGGTTATAGATAAGTCGACTGGATGTTTTAATGCT 2060359 Query 75239 ACTAAATTATGTAATTTCGGTGGTAAACAGTTTAAACAATGGAAACGTTTAGAAAA 75294 |||||||||||| || || ||||||| |||| | | |||| || |||||||| Sbjct 2060358 ACTAAATTATGTCATAGTGGCGGTAAACGATTTAGAAACTGGATGCGATTAGAAAA 2060303 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 76258 GTCTCTAATCGACATATGTTATGAACATATTAAAGATTCTTATTATTATGGTCTTTTTGG 76317 |||||| | | | ||||||||||||| || ||||| |||| |||||||| ||||| Sbjct 2060464 GTCTCTCAACAATGTATGTTATGAACAAATCAAAGACCAGTATTGGTATGGTCTCTTTGG 2060405 Query 76318 TGATTTTAAACTTATAATAGATaaaaaaaCAGGTTATTTTAATGCAACGAAACTTTGTAA 76377 |||||||| | | |||||||| || || | ||||||||| || ||| | ||| | Sbjct 2060404 AGATTTTAATTTGGTTATAGATAAGTCGACTGGATGTTTTAATGCTACTAAATTATGTCA 2060345 Query 76378 TTTAGCTGGTAAAAGATTTACTGACTGGA 76406 | | |||||| |||||| |||||| Sbjct 2060344 TAGTGGCGGTAAACGATTTAGAAACTGGA 2060316 >seq1206 Length=549353 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 2294 ATTACATAATTTTGTCGCATTAAAACAACCTGtttttttATCTATTATAAGTTTAAAATC 2353 |||||||||||| || |||||||||||||| || |||||||| | || ||||| | Sbjct 366495 ATTACATAATTTGGTAGCATTAAAACAACCAGTAGACTTATCTATGACCAGATTAAATTT 366436 Query 2354 ACCAAAAAGACCATAATAATAAGAATCTTTAATATGTTCATAACATATGTCGATTAGAGA 2413 ||||| |||||||| |||| |||||| || |||| |||||||| | | ||||| Sbjct 366435 TCCAAAGAGACCATACCAATACTGATCTTTGATTTGTTTATAACATAAATTATTAAGAGA 366376 Query 2414 CAt 2416 ||| Sbjct 366375 CAT 366373 Score = 89.7 bits (98), Expect = 8e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 226351 TATGTTATGAACATATTAAAGATTCTTATTATTATGGTCTTTTTGGTGATTTTAAACTTA 226410 |||||||| |||| || |||||| |||| |||||||| ||||| | ||||| || Sbjct 366389 TATGTTATAAACAAATCAAAGATCAGTATTGGTATGGTCTCTTTGGAAAATTTAATCTGG 366448 Query 226411 TAATAGATaaaaaaaCAGGTTGTTTTAATGCGACAAAATTATGTAAT 226457 | |||||||| || |||||||||||||| || |||||||||||| Sbjct 366449 TCATAGATAAGTCTACTGGTTGTTTTAATGCTACCAAATTATGTAAT 366495 >seq123 Length=2135277 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 123111 TATGGTCTTTTTGGTGGTTTTAAACTAGTAATCGATAAAACTAATGGTTATTTTAATGCA 123170 |||||||| ||||| | ||| || || || || |||||| ||| ||| ||||| || || Sbjct 576923 TATGGTCTCTTTGGAGATTTCAAGCTGGTTATAGATAAATCTACTGGATATTTCAACGCC 576864 Query 123171 ACTAAATTATGTAAAGACGGTGGTAAAAGATTCAAACATTGGAATGAAAATGATAAATCT 123230 ||||| ||||||||||| ||||| || | ||| |||||| || || | |||| Sbjct 576863 ACTAAGTTATGTAAAGATGGTGGAAAGAATTTCTTTCATTGGTTGGAGAACAAACAATCA 576804 Query 123231 AAAGAAATAATTA 123243 ||| || |||||| Sbjct 576803 AAAAAATTAATTA 576791 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/145 (74%), Gaps = 8/145 (6%) Strand=Plus/Plus Query 111001 AATTTTTTCC--CGTCTTTACACAACTTCGTAGCGTTAAAGTAACCTGTATTTTTATCTA 111058 |||| ||||| | |||||||| ||||| || ||||| || || || ||| |||||||| Sbjct 576833 AATTCTTTCCACCATCTTTACATAACTTAGTGGCGTTGAAATATCCAGTAGATTTATCTA 576892 Query 111059 TTATTAGTCTAAAATCTCCAAATAGACCATAATGAAATGAATCTTT---TATCTGTTCAT 111115 | | || | ||||||||||| |||||||| | | | ||| || ||||||| Sbjct 576893 TAACCAGCTTGAAATCTCCAAAGAGACCATA---CCAGTATTGTTTAACGATTTGTTCAT 576949 Query 111116 AACATATATCATTTAGAGACATTTT 111140 |||||| || ||| |||||||| || Sbjct 576950 AACATACATTATTCAGAGACATGTT 576974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731645192867200