Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_021325.1 Length=39108 Score E Sequences producing significant alignments: (Bits) Value seq2824 125 2e-24 seq3213 113 1e-20 >seq2824 Length=48975 Score = 125 bits (138), Expect = 2e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 38537 AATATAGCTTATGTAAGAGTTAGTACAGTAGAACAAAATGAAGAAAGACAATTAGAAGGA 38596 ||||| |||||||| | || ||||||||| ||||| || | ||| ||| | || | Sbjct 32204 AATATCGCTTATGTTCGGGTGTCTACAGTAGAGCAAAACGAGGCAAGGCAAATTGAGGCG 32263 Query 38597 TTaaaaaaaTATAACATAGAAAAATGGTTTACTGAAAAGATAAGTGCTAAAGATACTAAT 38656 || |||| |||| ||||| || ||||||||||||||| |||| || |||||||| ||| Sbjct 32264 TTGGAAAAGCATAATATAGAGAAGTGGTTTACTGAAAAGGTAAGCGCAAAAGATACCAAT 32323 Query 38657 AGGCCACAATTAAAAGCCATGTTAGAATTTGCTAGAGAAGGAGA 38700 ||||||||| || |||| |||||||| | || | ||||| || Sbjct 32324 AGGCCACAACTACAAGCTATGTTAGAGTACGCGCGCGAAGGCGA 32367 >seq3213 Length=2170589 Score = 113 bits (124), Expect = 1e-20 Identities = 245/364 (67%), Gaps = 2/364 (1%) Strand=Plus/Minus Query 38533 TATGAATATAGCTTATGTAAGAGTTAGTACAGTAGAACAAAATGAAGAAAGACAATTAGA 38592 || ||| ||||| ||| | ||||| ||| |||||| |||||| || || ||| || Sbjct 1880384 TAAGAAAATAGCATATATCAGAGTCAGTTCAGTAGGGCAAAATATGGAGAGGCAAG-AGG 1880326 Query 38593 AGGATTaaaaaaaTATAAC-ATAGAAAAATGGTTTACTGAAAAGATAAGTGCTAAAGATA 38651 || || ||| | | || || || | | | ||| | ||||||| |||||| Sbjct 1880325 AGTCTTTGAAATCTTTCGGGATTGATAAGTATTATCGTGAGAGCGTAAGTGCAAAAGATG 1880266 Query 38652 CTAATAGGCCACAATTAAAAGCCATGTTAGAATTTGCTAGAGAAGGAGATACAATTTTTG 38711 |||| | || || || |||| ||| |||| |||| | | ||||| ||| ||| | Sbjct 1880265 TTAATCGTCCGCAGTTGCAAGCAATGCTAGATTTTGTTCGTGAAGGCGATGTTGTTTATA 1880206 Query 38712 TTTGGGATTTTTCAAGACTAGCAAGAAGTACAAAGGATCTATTAGAATTAGTTGAAACTA 38771 ||| |||||||||||| | |||||||| ||||||||| | || | | || || | | Sbjct 1880205 TTTCTGATTTTTCAAGAATTGCAAGAAGCACAAAGGATTTGCTAAATATTGTGGATATTT 1880146 Query 38772 TGGAAGCTAAAGGAGTACATTTCAAAAGTATTAAAGAGAATTTAGATACTTCAACTCCTA 38831 || | ||||| || | || || | ||||| || | ||||| | || Sbjct 1880145 TGAGATTAAAAGGTGTTGAATTGGTCAGCTTGAAAGAAAAGATTGATACAAATTCGCCAG 1880086 Query 38832 CTGGAAAGTTAATGTTAACTATGATAGGGGCAATTAATGAATTTGAAAGAAATAATATGC 38891 | ||||| |||||| | || ||||| || || ||| |||||||||||||| | ||| | | Sbjct 1880085 CAGGAAAATTAATGCTCACGATGATTGGTGCTATTTATGAATTTGAAAGAGAAAATCTTC 1880026 Query 38892 TTGA 38895 |||| Sbjct 1880025 TTGA 1880022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124987192309280