Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq1991 111 2e-19 seq373 105 1e-17 seq2441 104 3e-17 seq179 95.1 2e-14 seq2298 93.3 6e-14 seq1948 87.8 3e-12 >seq1991 Length=147557 Score = 111 bits (122), Expect = 2e-19 Identities = 176/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 98946 AAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAAC 99005 |||| ||||| || || || |||||| | | | ||||| ||||||||||| || || Sbjct 6618 AAGAGCGACCGGACAGGAACGGGCACGATCAGTGTTTTCGGGCACCAGATGCGCTTTGAC 6559 Query 99006 TTGCAAGAAGG-TTTCCCG--CTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATC 99062 | | || || ||||||| ||| || | || | || || || ||||| || || Sbjct 6558 CTCAATGAGGGTTTTCCCGTACTGACCACAAAAAAAC--TG-CATCTACGCTCGATCATA 6502 Query 99063 CATGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGT 99122 |||||||| |||||||| || || || || |||||||| | || || | |||||| Sbjct 6501 CATGAACTTCTGTGGTTTCTCAAGGGAGATACCAATATAAAATATCTTCACGATAATAAC 6442 Query 99123 GTAACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAG 99182 || || || |||||||| |||||||| | ||| |||| || ||||| ||||| | Sbjct 6441 GTTACGATATGGGACGAGTGGGCGGATGCCGACGGCAACCTGGGCCCGGTCTACGGATAC 6382 Query 99183 CAGTGGCG 99190 |||||||| Sbjct 6381 CAGTGGCG 6374 >seq373 Length=1274844 Score = 105 bits (116), Expect = 1e-17 Identities = 181/260 (70%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 98946 AAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAA- 99004 ||| |||| ||||| || || || || | | | || || | || ||||| || || Sbjct 929023 AAGGAAGATCGTACAGGAACGGGTACTTATAGTGTATTTGGTTATCAAATGCGCTTTAAT 929082 Query 99005 CTTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCA 99064 || || || || || ||| | || || || || ||||| || || |||||||| Sbjct 929083 CTAGCG-GATGGGTTTCCGTTAGTTACCACTAAAAAATGCCATCTTAAGTCGATTATCCA 929141 Query 99065 TGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGT 99124 ||| | ||||||| || | ||||| |||||||| | ||||| ||||| |||||||| Sbjct 929142 TGAGTTATTGTGGTTTTTGCAGGGCGATACCAATATTCGTTACCTTAAAGAAAATGGTGT 929201 Query 99125 AACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCA 99184 | |||||||| |||||||| || |||| || || | || || || || ||| | || Sbjct 929202 GAGTATTTGGGATGAATGGGCTGATGAAAACGGTGATTTAGGCCCTGTGTATGGTTATCA 929261 Query 99185 GTGGCGGGCATGGACTGCGC 99204 ||||| ||||| | |||| Sbjct 929262 ATGGCGTTCATGGCCAGCGC 929281 >seq2441 Length=2995558 Score = 104 bits (114), Expect = 3e-17 Identities = 174/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 98950 AAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGC 99009 |||||||||| || ||||| || | | ||||| |||||||||||||| || | Sbjct 2867131 AAGACCGTACAGGCACAGGAACAATCAGCGTATTCGGACACCAGATGCGTTTTGACCTTA 2867072 Query 99010 AAGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAAC 99069 | || |||||||| | || |||||| |||||| || ||||| ||||||| Sbjct 2867071 ACGATGGTTTCCCATGCCTGACTACCAAGAAGCTTCACCTGAAATCCATTATTCATGAAC 2867012 Query 99070 TGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCA 99129 | || ||||| ||||||| || || ||| | ||||||| |||| || || ||| | Sbjct 2867011 TTCTATGGTTTTTGAAAGGTGATACAAATGTTAAGTACCTCCAAGACAACGGAGTACGTA 2866952 Query 99130 TTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGC 99189 | ||| | |||||||| ||| | || || || | |||| || || || | || |||| Sbjct 2866951 TCTGGAATGAATGGGCAGACGAGAACGGAGAATTAGGTCACGTTTATGGATACCAATGGC 2866892 Query 99190 GGGCATGGACTG 99201 | | ||| ||| Sbjct 2866891 GTTCCTGGCCTG 2866880 >seq179 Length=2312354 Score = 95.1 bits (104), Expect = 2e-14 Identities = 179/261 (69%), Gaps = 12/261 (5%) Strand=Plus/Plus Query 98946 AAGAAAGACCGTACCGGTACAGGCACGCTTTCTA---TCTTCGGCCACCAGATGCGTTTC 99002 || ||||||||||| || ||||| ||| || | | ||||| |||||||| | || Sbjct 182147 AAAAAAGACCGTACAGGAACAGGAACG---TCCAGCGTTTTCGGTTACCAGATGAGATTT 182203 Query 99003 AACTTGCAAGAAGGTTTCCCG---CTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATT 99059 ||| | || ||||| || ||| ||| ||| | || | | || | || || Sbjct 182204 AACCTTCAGGAAGGGTTTCCGTGTCTGACAACCAAAAAACTT---CATTTAAAATCAATA 182260 Query 99060 ATCCATGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAAT 99119 || ||||| | | ||||| |||| || || |||||||| | || || || || || Sbjct 182261 ATTTATGAATTATTATGGTTTTTGAACGGAGATACCAATATAAAATATCTAAATGAACAT 182320 Query 99120 GGTGTAACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGT 99179 || |||| || ||| |||||||||| || |||| || |||||||| | |||||||| Sbjct 182321 GGAGTAAAAATATGGAACGAATGGGCCGATGAAAACGGAGACCTCGGACATGTATACGGA 182380 Query 99180 AAGCAGTGGCGGGCATGGACT 99200 | || ||||| ||||| || Sbjct 182381 TATCAATGGCGTTCATGGCCT 182401 >seq2298 Length=83281 Score = 93.3 bits (102), Expect = 6e-14 Identities = 183/266 (69%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 98883 TAAGGAA-CGACTATGAAACAGTATCAAGAT--TTAATGGCTGAAGTCTTTGCGAAAGGT 98939 || |||| |||| |||||||| ||||||||| || | ||| | || | | || ||| Sbjct 73518 TACGGAATCGAC-ATGAAACAATATCAAGATCTTTTACGGC--ATGTTATGGATAACGGT 73462 Query 98940 ACGCCGAAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGT 98999 | || | |||||||| || || || || | | ||||| | || |||||| Sbjct 73461 AACTTTAAAAGTGACCGTACGGGAACGGGTACAAAAAGTGTATTCGGATATCAAATGCGT 73402 Query 99000 TTCAACTTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATT 99059 || || ||| |||| |||||||| | ||||||| ||| || ||| || ||| Sbjct 73401 TTTAATTTGGAAGAGGGTTTCCCTGTTTTAACGACAAAGAAACTGCATCTGAAATCGATT 73342 Query 99060 ATCCATGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAAT 99119 || |||| |||| ||||| | || || || |||||||| | || || |||||| | Sbjct 73341 ATTTATGAGTTGCTATGGTTTTTAAAGGGTGATACCAATATTAAATATCTAAAAGATCAC 73282 Query 99120 GGTGTAACCATTTGGGACGAATGGGC 99145 || || | ||||||||||||||||| Sbjct 73281 GGCGTTAGTATTTGGGACGAATGGGC 73256 >seq1948 Length=475166 Score = 87.8 bits (96), Expect = 3e-12 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 98950 AAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGC 99009 ||||||| ||||| || || || | | | || || ||||||||||| || ||| || Sbjct 215260 AAGACCGAACCGGAACCGGAACCTATAGTGTATTTGGTCACCAGATGCGGTTTAACATGG 215319 Query 99010 AAGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAAC 99069 ||||||| || || || | || ||||| | || || || ||||| | || | Sbjct 215320 AAGAAGGATTTCCTTTGCTTACCACCAAAAAATTACATCTTAAATCGATTATATACGAGC 215379 Query 99070 TGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCA 99129 | |||||||| |||||||| ||||| || | || || ||||| ||||||| | Sbjct 215380 TACTGTGGTTTCTGAAAGGAGACACGAACGCTAAATATTTGCAAGATCATGGTGTTCGTA 215439 Query 99130 TTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGC 99189 | ||| |||||||||| || | ||||| | || || | | ||||| | || |||| Sbjct 215440 TCTGGAACGAATGGGCAGATGAGAATGGTAATCTTGGACATATTTACGGGTATCAATGGC 215499 Query 99190 G 99190 | Sbjct 215500 G 215500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716414714255680