Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq2029 86.0 2e-12 >seq2029 Length=231691 Score = 86.0 bits (94), Expect = 2e-12 Identities = 205/305 (67%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 33165 TATGGCATCTCGAGGAATCAACAAAGTAATCATTTTGGGCACTCTCGGACAAGACCCGGA 33224 ||||||| || |||| || || ||||| || | | || | | | || | || || || Sbjct 11793 TATGGCAGCTAGAGGTATTAATAAAGTTATATTAGTCGGTAATATTGGTAATGAGCCAGA 11734 Query 33225 AGTTAAATATATGCCTTCTGGCGGCGCTGTGTGCAA-TCTGTCTCTGGCAACATCAGA-G 33282 | | ||||||||| ||| || || |||| | | ||| | || || || || | Sbjct 11733 AATGCGCTATATGCCTAACGGCAATGCAGTA-GCAACTGTTTCTTTAGCCACTTCTGACG 11675 Query 33283 CAGTGGAACGATAAAGCAACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTT 33342 || ||||| |||||| || || ||| | | || | || |||||||| ||||| || Sbjct 11674 CA-TGGAAAGATAAAAATACTGGTGAACAACAGGAACGTACCGAATGGCACCGCGTAGTA 11616 Query 33343 ATCTTCGGAAAGCTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTAT 33402 |||| || ||| | || || | | ||| |||| ||| ||||| || || ||||| Sbjct 11615 TTCTTTGGTAAGTTAGCTGAAATCGTTGGGCAATATGTGCATAAAGGTTCAAAGCTGTAT 11556 Query 33403 GTAGAAGGAAAATTACGTACTCGCAAATGGACAGATCAAAGCGGTGTTGAAAAATACACT 33462 |||||||| ||| || || |||||||| ||||| |||||||| || ||| Sbjct 11555 GTAGAAGGCCGTCTACAAACCCGTAAATGGACTGATCAGCAAGGTGTTGACCGTTATACT 11496 Query 33463 ACTGA 33467 ||||| Sbjct 11495 ACTGA 11491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152000037250656