Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq1991 102 9e-17 seq3496 98.7 1e-15 seq1690 93.3 5e-14 seq1604 91.5 2e-13 seq1752 87.8 2e-12 seq385 86.0 7e-12 >seq1991 Length=147557 Score = 102 bits (112), Expect = 9e-17 Identities = 70/78 (90%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 9769 CCTTGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTT 9827 ||| ||||||||||||||||||| |||||| ||||||||||||||||| |||| ||||| Sbjct 145191 CCTCGGGGAATTAGCTCAGTTGGCTAGAGCACCTGCTTTGCAAGCAGGGGGTCATCGGTT 145132 Query 9828 CGAGTCCGCTATTCTCCA 9845 ||| |||| ||||||||| Sbjct 145131 CGACTCCGATATTCTCCA 145114 >seq3496 Length=15201 Score = 98.7 bits (108), Expect = 1e-15 Identities = 67/74 (91%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 9773 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 ||||||||||||||||||| |||||| ||||||||||||||||| |||| |||||||| Sbjct 7698 GGGGAATTAGCTCAGTTGGCTAGAGCACCTGCTTTGCAAGCAGGGGGTCATCGGTTCGAC 7639 Query 9832 TCCGCTATTCTCCA 9845 |||| ||||||||| Sbjct 7638 TCCGATATTCTCCA 7625 >seq1690 Length=1574822 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 9772 TGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 |||||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||| Sbjct 1439857 TGGGGATTTAGCTCAGTTGGTAGAGCACCTGCCTTGCAAGCAGGATGTCAGGAGTTCGAC 1439798 Query 9832 TCCGCTATTCTCCA 9845 || ||| |||||| Sbjct 1439797 TCTCCTAATCTCCA 1439784 >seq1604 Length=351056 Score = 91.5 bits (100), Expect = 2e-13 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 147057 CAGTAGCTCAGC-GGATAGAGCAACTGCCTTCTAAGCAGTTGGTCGCAGGTTCAAATCCT 147115 |||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||| Sbjct 255407 CAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCT 255348 Query 147116 GCCTG 147120 | ||| Sbjct 255347 GACTG 255343 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 148131 CGGGGTGTAGCTTAGCTTGGT-AGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAA 148189 ||||||||||| |||| ||| | ||||| | ||||||| | ||||||||||||||| | Sbjct 255571 CGGGGTGTAGCGTAGCCCGGTCATCGCGCCTGGTTTGGGACCAGGAGGTCGCAGGTTCGA 255512 Query 148190 ATCCTGCCACCCCGA 148204 ||||||||||||||| Sbjct 255511 ATCCTGCCACCCCGA 255497 >seq1752 Length=186427 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 148131 CGGGGTGTAGCTTAGCTTGGT-AGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAA 148189 ||||||||||| ||| ||| | ||||| ||||||||||| ||||||||||||||| | Sbjct 14823 CGGGGTGTAGCGTAGTCCGGTTATCGCGCCTGCTTTGGGAGCAGGAGGTCGCAGGTTCGA 14764 Query 148190 ATCCTGCCACCCCGA 148204 ||||||||||||||| Sbjct 14763 ATCCTGCCACCCCGA 14749 Score = 86.0 bits (94), Expect = 7e-12 Identities = 55/59 (93%), Gaps = 1/59 (2%) Strand=Plus/Minus Query 147059 GTAGCTCAGC-GGATAGAGCAACTGCCTTCTAAGCAGTTGGTCGCAGGTTCAAATCCTG 147116 |||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||||||| Sbjct 14697 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCTG 14639 >seq385 Length=1145925 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 9773 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 ||||||||||||||| ||| |||||||||||| ||||| |||||| |||| ||||||| Sbjct 504578 GGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAAGGGTTCGAC 504637 Query 9832 TCCGCTATTCTCCA 9845 ||| ||||||||| Sbjct 504638 TCCCTTATTCTCCA 504651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549452072018240