Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_021802.1 Length=53664 Score E Sequences producing significant alignments: (Bits) Value seq3099 87.8 6e-13 >seq3099 Length=1637421 Score = 87.8 bits (96), Expect = 6e-13 Identities = 198/293 (68%), Gaps = 15/293 (5%) Strand=Plus/Minus Query 9424 AATTAAAATTAAAAACTAATGA---TACTAAGACGATTAGGCAACAAAAAGAAAATAGCT 9480 ||||| | | |||| | |||| || ||||| ||||||| |||||| ||| ||||| Sbjct 304306 AATTAGAGTATAAAAATTATGACTTTATTAAGAAGATTAGGAAACAAATCGAAGATAGCA 304247 Query 9481 AGTGAAATACAAAAACATTTTCC--GCCACATAAAATTTACATAGAGCCtttttttGGTG 9538 | || | || ||||||| |||||| ||| |||| |||| ||||| || | Sbjct 304246 AAAGATGTGCAGTCGTATTTTCCACGCCACAAGCAAT--ACATTGAGCTGTTTTTCGGGG 304189 Query 9539 CTGGAGGTATGTTCTTTAATAAACCAAAAGCAAAGTATAATATTGTAAACGATTTAGATT 9598 | || || ||||| || |||||||| ||||| || ||||| || || |||||| | || Sbjct 304188 CGGGCGGGATGTTTTTCAATAAACCCAAAGCCAAATATAACATCGTCAACGATATGGACA 304129 Query 9599 CTGACGTGTTTAATTTGTTTCAAGTTGTAATGAACCAAAAAGAAGAACT---AGAAAAGG 9655 || || | ||| ||||| ||||||| || | ||| || || |||| | Sbjct 304128 GCGAGGTATATAACCTGTTTTGCGTTGTAAAAGACAATAAAAGCGACCTGATAGAATA-- 304071 Query 9656 CTTTTTACATG-ATGCCTATACATTCTGATTTATTAGATTACTGGAAAAAGAA 9707 | | | | | ||||| ||||| | || || | || || ||||||||||| Sbjct 304070 --TATCAAACGCATGCCCATACACGCCGACTTGTGGGAGTATTGGAAAAAGAA 304020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171552679159904