Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_021806.1
Length=100418
Score E
Sequences producing significant alignments: (Bits) Value
seq179 125 5e-24
seq2787 105 4e-18
seq1948 93.3 3e-14
>seq179
Length=2312354
Score = 125 bits (138), Expect = 5e-24
Identities = 216/309 (70%), Gaps = 6/309 (2%)
Strand=Plus/Plus
Query 96131 CTTTAAAGCCTTCTTCTAGAATTTTCTGAGCTAATACTGTAGCTGTGGTTGTTCCATCTC 96190
||||||| ||| | | || || ||||||||||||||| ||||| || |||||||| |
Sbjct 44694 CTTTAAA-CCTACATTTACTATAGACTGAGCTAATACTGTTGCTGTTGTAGTTCCATCAC 44752
Query 96191 CTACTTCTGTATTAGTATTCTCAGCTACTTGTTTAATCATTTGAGCACCTAAGTTTTCAA 96250
|| | ||| || || || ||| |||| |||| ||| |||||||| | || ||
Sbjct 44753 CTGCATCTTCGTTGGTTTTTGAAGCAACTTCCTTAACCATCTGAGCACCCATATTCATAA 44812
Query 96251 ATGGATCTTCTAAATGAATTTCTCTAGCCACACTTACACCATCTTTAGTAATGATTGGAT 96310
| || |||| || | |||||| |||| ||| |||| |||||||| ||||| ||
Sbjct 44813 ACGGGTCTTTTATTTCTATTTCTTTAGCAACAGTTACCCCATCTTTTGTAAT--CTGAGG 44870
Query 96311 TATACTG--GTCTAAACCTAGTATAACATTCTTACCTGATGGTCCTAGAGTTACTTTAAC 96368
| || | | | | | | | ||||| |||| ||| |||| || ||||| ||
Sbjct 44871 TGCACCGAATTTTTTATCAATAACTACATTACGACCTTTTGGACCTAAGGTAACTTTCAC 44930
Query 96369 TGCATTAGCTAAAGCATCTACACCTCTCTTTAAGGCTTCTCTTGATTCTTGATTATATAT 96428
|||| |||||||| ||| |||||| | ||||| |||||||||||| || | || |
Sbjct 44931 AGCATCAGCTAAAGTATCAACACCTTTTTTTAATAAATCTCTTGATTCTATATCAAATTT 44990
Query 96429 AATCTTCTT 96437
||| |||||
Sbjct 44991 AAT-TTCTT 44998
>seq2787
Length=1710943
Score = 105 bits (116), Expect = 4e-18
Identities = 170/244 (70%), Gaps = 14/244 (6%)
Strand=Plus/Minus
Query 96157 TGAGCTAATACTGTAGCTGTGGTTGTTCCATCTCCTACTTCTGTATTAGTATTCTCAGCT 96216
||||||||||||||||| || || || || || || | || ||| || || |||
Sbjct 798063 TGAGCTAATACTGTAGCAGTAGTAGTACCGTCGCCGGCATCATCATTGGTTTTAGAAGCA 798004
Query 96217 ACTTGTTTAATCATTTGAGCACCTAAGTTTTCAAATGGATCTTCTAAATGAATTTCTCTA 96276
|||| ||||| || ||| || || | ||||| |||||| || || || | | |||| ||
Sbjct 798003 ACTTCTTTAACCAATTGGGCTCCCATGTTTTGAAATGGTTCCTCCAACTCCACTTCTTTA 797944
Query 96277 GCCACACTTACACCATCTTTAGTAATGATTG-------GATTATACTGGTCTAAACCTAG 96329
|| ||| | || |||||||| |||||| || || | | || || | |
Sbjct 797943 GCTACAGTCACGCCATCTTTGGTAATGTGTGGTGCGCCGAAT-TTCTTTTCGATA----- 797890
Query 96330 TATAACATTCTTACCTGATGGTCCTAGAGTTACTTTAACTGCATTAGCTAAAGCATCTAC 96389
|| || || ||| ||| ||||| |||||||| |||||||||||||| ||||| ||
Sbjct 797889 -ATTACGTTGCGGCCTTTTGGACCTAGTGTTACTTTTACTGCATTAGCTAATGCATCCAC 797831
Query 96390 ACCT 96393
||||
Sbjct 797830 ACCT 797827
>seq1948
Length=475166
Score = 93.3 bits (102), Expect = 3e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 96157 TGAGCTAATACTGTAGCTGTGGTTGTTCCATCTCCTACTTCTGTATTAGTATTCTCAGCT 96216
|||||||||||||| ||||| |||||||| || || | | ||| || || ||||
Sbjct 176354 TGAGCTAATACTGTTGCTGTTGTTGTTCCGTCACCAGCGTTATCATTTGTTTTAGAAGCT 176413
Query 96217 ACTTGTTTAATCATTTGAGCACCTAAGTTTTCAAATGGATCTTCTAAATGAATTTCTCTA 96276
|||| ||||| | |||||| || | |||||| ||||||| ||| || | || |||| |
Sbjct 176414 ACTTCTTTAACTAATTGAGCTCCCATGTTTTCGAATGGATTTTCCAACTCAACTTCTTTC 176473
Query 96277 GCCACACTTACACCATCTTTAGTAAT 96302
|| || | ||||| ||||| || ||
Sbjct 176474 GCTACTGTAACACCGTCTTTTGTGAT 176499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 321115744749448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |