Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_021806.1 Length=100418 Score E Sequences producing significant alignments: (Bits) Value seq179 125 5e-24 seq2787 105 4e-18 seq1948 93.3 3e-14 >seq179 Length=2312354 Score = 125 bits (138), Expect = 5e-24 Identities = 216/309 (70%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 96131 CTTTAAAGCCTTCTTCTAGAATTTTCTGAGCTAATACTGTAGCTGTGGTTGTTCCATCTC 96190 ||||||| ||| | | || || ||||||||||||||| ||||| || |||||||| | Sbjct 44694 CTTTAAA-CCTACATTTACTATAGACTGAGCTAATACTGTTGCTGTTGTAGTTCCATCAC 44752 Query 96191 CTACTTCTGTATTAGTATTCTCAGCTACTTGTTTAATCATTTGAGCACCTAAGTTTTCAA 96250 || | ||| || || || ||| |||| |||| ||| |||||||| | || || Sbjct 44753 CTGCATCTTCGTTGGTTTTTGAAGCAACTTCCTTAACCATCTGAGCACCCATATTCATAA 44812 Query 96251 ATGGATCTTCTAAATGAATTTCTCTAGCCACACTTACACCATCTTTAGTAATGATTGGAT 96310 | || |||| || | |||||| |||| ||| |||| |||||||| ||||| || Sbjct 44813 ACGGGTCTTTTATTTCTATTTCTTTAGCAACAGTTACCCCATCTTTTGTAAT--CTGAGG 44870 Query 96311 TATACTG--GTCTAAACCTAGTATAACATTCTTACCTGATGGTCCTAGAGTTACTTTAAC 96368 | || | | | | | | | ||||| |||| ||| |||| || ||||| || Sbjct 44871 TGCACCGAATTTTTTATCAATAACTACATTACGACCTTTTGGACCTAAGGTAACTTTCAC 44930 Query 96369 TGCATTAGCTAAAGCATCTACACCTCTCTTTAAGGCTTCTCTTGATTCTTGATTATATAT 96428 |||| |||||||| ||| |||||| | ||||| |||||||||||| || | || | Sbjct 44931 AGCATCAGCTAAAGTATCAACACCTTTTTTTAATAAATCTCTTGATTCTATATCAAATTT 44990 Query 96429 AATCTTCTT 96437 ||| ||||| Sbjct 44991 AAT-TTCTT 44998 >seq2787 Length=1710943 Score = 105 bits (116), Expect = 4e-18 Identities = 170/244 (70%), Gaps = 14/244 (6%) Strand=Plus/Minus Query 96157 TGAGCTAATACTGTAGCTGTGGTTGTTCCATCTCCTACTTCTGTATTAGTATTCTCAGCT 96216 ||||||||||||||||| || || || || || || | || ||| || || ||| Sbjct 798063 TGAGCTAATACTGTAGCAGTAGTAGTACCGTCGCCGGCATCATCATTGGTTTTAGAAGCA 798004 Query 96217 ACTTGTTTAATCATTTGAGCACCTAAGTTTTCAAATGGATCTTCTAAATGAATTTCTCTA 96276 |||| ||||| || ||| || || | ||||| |||||| || || || | | |||| || Sbjct 798003 ACTTCTTTAACCAATTGGGCTCCCATGTTTTGAAATGGTTCCTCCAACTCCACTTCTTTA 797944 Query 96277 GCCACACTTACACCATCTTTAGTAATGATTG-------GATTATACTGGTCTAAACCTAG 96329 || ||| | || |||||||| |||||| || || | | || || | | Sbjct 797943 GCTACAGTCACGCCATCTTTGGTAATGTGTGGTGCGCCGAAT-TTCTTTTCGATA----- 797890 Query 96330 TATAACATTCTTACCTGATGGTCCTAGAGTTACTTTAACTGCATTAGCTAAAGCATCTAC 96389 || || || ||| ||| ||||| |||||||| |||||||||||||| ||||| || Sbjct 797889 -ATTACGTTGCGGCCTTTTGGACCTAGTGTTACTTTTACTGCATTAGCTAATGCATCCAC 797831 Query 96390 ACCT 96393 |||| Sbjct 797830 ACCT 797827 >seq1948 Length=475166 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 96157 TGAGCTAATACTGTAGCTGTGGTTGTTCCATCTCCTACTTCTGTATTAGTATTCTCAGCT 96216 |||||||||||||| ||||| |||||||| || || | | ||| || || |||| Sbjct 176354 TGAGCTAATACTGTTGCTGTTGTTGTTCCGTCACCAGCGTTATCATTTGTTTTAGAAGCT 176413 Query 96217 ACTTGTTTAATCATTTGAGCACCTAAGTTTTCAAATGGATCTTCTAAATGAATTTCTCTA 96276 |||| ||||| | |||||| || | |||||| ||||||| ||| || | || |||| | Sbjct 176414 ACTTCTTTAACTAATTGAGCTCCCATGTTTTCGAATGGATTTTCCAACTCAACTTCTTTC 176473 Query 96277 GCCACACTTACACCATCTTTAGTAAT 96302 || || | ||||| ||||| || || Sbjct 176474 GCTACTGTAACACCGTCTTTTGTGAT 176499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321115744749448