Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq783 143 2e-29 seq242 132 4e-26 seq2315 123 2e-23 seq1551 107 2e-18 seq211 96.9 3e-15 >seq783 Length=580412 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || ||||| || || || ||||| || ||| | Sbjct 389901 ATGCAGATTTTTGTGAAGACTCTTACTGGCAAAACCATCACTCTAGAAGTTGAGGCCTCA 389960 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| ||||| || || || ||||| || || || || ||| Sbjct 389961 GACACAATCGAAAATGTCAAAGCCAAGATTCAGGATAAGGAAGGCATTCCCCCAGACCAA 390020 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| || ||||| || ||| ||| | |||| || || ||| Sbjct 390021 CAGAGATTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTGTCCGACTACAAC 390080 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| ||||| ||||| || | ||||||||| | || || || Sbjct 390081 ATTCAAAAAGAATCTACACTTCATCTTGTGTTGCGACTTCGTGGTGG 390127 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || ||||| ||||||||||| | ||||| || || | Sbjct 390129 ATGCAGATTTTTGTAAAAACTCTTACCGGGAAAACTATTACTTTGGAAGTCGAGGCTTCG 390188 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| || || || ||||| ||||| || || || || ||| Sbjct 390189 GATACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGACCAA 390248 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || ||||| ||||| ||| | |||||||| ||| Sbjct 390249 CAGAGATTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCAGATTACAAC 390308 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| ||||| || | ||| || || | || || || Sbjct 390309 ATTCAGAAAGAATCTACACTCCATCTTGTGCTGAGACTTCGTGGTGG 390355 Score = 107 bits (118), Expect = 2e-18 Identities = 139/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || |||||||| || || | ||||| || || | Sbjct 390357 ATGCAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACTTTGGAAGTCGAGGCTTCA 390416 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||| || ||||| ||||| || || || || ||| Sbjct 390417 GACACGATCGAAAACGTTAAAGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAA 390476 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || ||||| |||||| || | ||||||| || || Sbjct 390477 CAGAGATTGATCTTTGCTGGCAAGCAGCTAGAGGATGGAAGGACTCTGTCAGACTACAAT 390536 Query 24884 ATTCA-AAAGG 24893 ||||| ||||| Sbjct 390537 ATTCAGAAAGG 390547 Score = 100 bits (110), Expect = 3e-16 Identities = 138/192 (72%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || || |||||||| || || ||||| ||||| | Sbjct 387057 GATGCAGATTTTCGTGAAGACCCTGACAGGGAAAACTATCACCCTAGAAGTTGAAGCTTC 387116 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || ||||| ||||||||||| ||||| ||||| || || Sbjct 387117 AGATACCATTGAGAACGTGAAGGCTAAGATTCAAGACAAAGAGGGAATTCCTCCAGACCA 387176 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | || |||||||| || ||||| |||| || |||| ||||||| || || Sbjct 387177 ACAGAGATTAATCTTTGCTGGCAAACAATTGGAAGACGGAAGAACGCTGTCAGACTACAA 387236 Query 24883 CATTCA-AAAGG 24893 || || ||||| Sbjct 387237 TATACAGAAAGG 387248 >seq242 Length=1788442 Score = 132 bits (146), Expect = 4e-26 Identities = 147/192 (77%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| |||| |||||||| ||||| ||||| || |||||| | Sbjct 1569777 ATGCAGATATTCGTGAAAACTTTAACGGGTAAAACAATTACCCTCGAGGTTGAAGCCTCT 1569836 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || ||||||||||| ||||| || ||||| |||||| Sbjct 1569837 GATACTATTGAAAATGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCTCCTGATCAA 1569896 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 || | ||||| ||||| || || ||||| ||||| | || |||| | || |||||||| Sbjct 1569897 CAGAGATTGATTTTTGCTGGAAAGCAGCTAGAGGA-TGGACGAACACTCTCTGATTATAA 1569955 Query 24883 CATTCA-AAAGG 24893 ||||| ||||| Sbjct 1569956 TATTCAGAAAGG 1569967 >seq2315 Length=138946 Score = 123 bits (136), Expect = 2e-23 Identities = 143/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| || || |||||||| || || || || || ||| | | Sbjct 26777 GATGCAGATTTTTGTGAAAACTCTTACTGGTAAAACCATAACCCTTGAGGTGGAACCATC 26836 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | |||||| ||| || ||||||||||| || || ||||| ||||| Sbjct 26837 TGATACCATTGAGAATGTAAAAGCAAAAATTCAAGACAAAGAGGGGATTCCTCCTGATCA 26896 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATA 24881 || | ||||| || || |||||||||||||| || | || ||| | ||||| |||| Sbjct 26897 GCAGAGATTGATTTTCGCAGGGAAACAGCTGGAAGA-TGGACGCACACTTTCAGACTATA 26955 Query 24882 ACATTCAAAA 24891 |||||||||| Sbjct 26956 ACATTCAAAA 26965 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || | || || |||||||| || | ||||| ||| | | Sbjct 27131 ATGCAAATCTTCGTTAAGACTTTGACTGGAAAAACTATCACCTTGGAAGTGGAACCATCT 27190 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| |||||| |||||| |||||||| ||||| || ||||| ||||| Sbjct 27191 GATACAATTGAAAATGTAAAAGCAAAGATACAAGACAAGGAAGGTATTCCTCCTGATCAG 27250 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | |||||||| || || |||||||||||| | | |||| ||||| ||| Sbjct 27251 CAAAGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACACTGTCTGATTACAAC 27310 Query 24884 ATTCAAAA 24891 || ||||| Sbjct 27311 ATACAAAA 27318 Score = 116 bits (128), Expect = 3e-21 Identities = 143/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || ||||| || || || || |||||| | | Sbjct 27520 ATGCAGATATTTGTGAAGACCCTCACAGGAAAAACCATCACACTGGAGGTAGAACCATCT 27579 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| ||||| |||||| ||||||||||||||||| || || ||||| Sbjct 27580 GATACCATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCAGATCAG 27639 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || || || || ||||| || |||||| |||| ||| ||| | || |||| || || | Sbjct 27640 CAGCGATTAATTTTTGCAGGCAAACAGTTGGAAGATGGTCG-CACAC-TGTCGGACTACA 27697 Query 24882 ACATTCAAAAGG 24893 | |||||||||| Sbjct 27698 ATATTCAAAAGG 27709 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || ||||| || || || || |||||| | | Sbjct 28961 ATGCAGATATTTGTGAAGACCCTCACAGGAAAAACCATCACACTGGAGGTAGAACCATCT 29020 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| ||||| |||||| ||||||||||||||||| || || || || Sbjct 29021 GATACCATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCAGACCAG 29080 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || || || ||||| || |||||| |||| ||| | | |||| || || || Sbjct 29081 CAGCGATTAATTTTTGCAGGAAAACAGTTGGAAGATGGCCGCACACTGTCGGACTACAAT 29140 Query 24884 ATTCAAAAGG 24893 |||||||||| Sbjct 29141 ATTCAAAAGG 29150 Score = 104 bits (114), Expect = 2e-17 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || ||||| || || || || |||||| | | Sbjct 28022 ATGCAGATATTTGTGAAGACCCTCACAGGCAAAACCATCACACTGGAGGTAGAACCATCT 28081 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| ||||| ||| || ||||||||||||||||| || || ||||| Sbjct 28082 GATACCATTGAAAATGTAAAGGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAG 28141 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || || || || ||||| || |||||| |||| ||| ||| | || |||| || || | Sbjct 28142 CAGCGATTAATTTTTGCAGGCAAACAGTTGGAAGATGGTCG-CACAC-TGTCGGACTACA 28199 Query 24882 ACATTCAAAA 24891 | || ||||| Sbjct 28200 ATATCCAAAA 28209 Score = 102 bits (112), Expect = 7e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || ||||| | ||||| ||| | | Sbjct 32993 ATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACAATTACATTGGAAGTGGAACCTTCA 33052 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | |||||| |||||| ||||| || || ||||| ||||| || || Sbjct 33053 GATACCATTGAGAATGTAAAAGCAAAGATTCAAGATAAGGAGGGAATCCCTCCAGACCAG 33112 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || | | || ||||| || |||||||| |||||| ||| | || | |||||||| | Sbjct 33113 CAGAGACTCATTTTTGCTGGCAAACAGCTCGAGGATGGTCG-CACAC-TTTCAGATTACA 33170 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 | ||||| || || || || || || ||||| | || |||| || || Sbjct 33171 ATATTCAGAAAGAGTCTACTCTGCATTTGGTTCTCCGTCTGCGAGGTGG 33219 >seq1551 Length=444118 Score = 107 bits (118), Expect = 2e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 24749 GAAGTAGAAGCCACCGACAC-AGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGG 24807 ||||| || || | ||||| | || ||||| |||| | ||| || || ||| ||||| Sbjct 25522 GAAGTCGAGGCTTCAGACACGATTAAAAACGTTAAATCCAAAATTCAGAG-CAAGGAAGG 25464 Query 24808 AATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAA 24867 || ||||| || ||||| | |||||||||||||| || ||||| |||||| |||| Sbjct 25463 CATTCCTCCAGACCAACAGAGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGAAGAAC 25404 Query 24868 CATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGG 24927 ||||||| || || ||||| || ||||| ||||| || |||| || || ||| | || Sbjct 25403 ATTGTCAGACTACAATATTCAGAAAGAATCCACACTTCATCTGGTTTTCCGGTTGAGAGG 25344 Query 24928 AGG 24930 || Sbjct 25343 TGG 25341 >seq211 Length=1809889 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 ||||| || ||||| | |||||||| || || || || || || || || || || ||| Sbjct 911714 TATTCCACTATTTCTGTGCACAAATTGCTGCATTTAATTGTCCCCAAGTTCTGCTGGTTG 911655 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTG 139240 ||||||||| ||||||||||| || ||||| || ||||| ||||| || ||||||| Sbjct 911654 GATTTTCGGTTGCAAGCATCTTTATACAGCATGTATGGTGTTCCAGTCTCTACTTGTG 911597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449758176733760