Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2315 111 1e-19 seq605 111 1e-19 seq783 109 5e-19 seq242 91.5 1e-13 >seq2315 Length=138946 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || || || ||||| || || ||||| || ||| | ||| ||| || Sbjct 27130 AATGCAAATCTTCGTTAAGACTTTGACTGGAAAAACTATCACCTTGGAAGTGGAACCATC 27189 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | |||||| ||||| ||||| ||||| | || ||||| Sbjct 27190 TGATACAATTGAAAATGTAAAAGCAAAGATACAAGACAAGGAAGGTATTCCTCCTGATCA 27249 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||||||| | ||| ||||| ||||||||||||| | | ||| || | |||||||| Sbjct 27250 GCAAAGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACACTGTCTGATTACAA 27309 Query 110452 CATTCAAAAAG 110462 ||| ||||||| Sbjct 27310 CATACAAAAAG 27320 >seq605 Length=673109 Score = 111 bits (122), Expect = 1e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34490 TGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGC 34549 |||| || | ||| | || ||||| | || ||| || || ||||||||||| |||| Sbjct 33792 TGGCAGGTCTTCCTATAGCTTTGGCAACATCTATCATATTCACAATGACAGTCTTAATGC 33851 Query 34550 CGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 |||||||||| || || |||||||| | || ||| ||||| ||||||||||| || || | Sbjct 33852 CGTTGCCCTTGCCCTCAACCTTGGCACGGAGGCGGGGCATCTTGTAGCGGTAAAATGCAT 33911 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 | || ||||||| || |||||| ||||||| Sbjct 33912 CGCTTACGCTGCGGTTCACATTCACACTCCCCAT 33945 >seq783 Length=580412 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| |||||| | ||||| ||||| ||||| | ||| ||| || Sbjct 390128 AATGCAGATTTTTGTAAAAACTCTTACCGGGAAAACTATTACTTTGGAAGTCGAGGCTTC 390187 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| ||| | || ||| || ||| ||||| |||||| | ||| || || Sbjct 390188 GGATACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGACCA 390247 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||| | || | ||| || || ||||| ||||| | | |||| | | |||||||| Sbjct 390248 ACAGAGATTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCAGATTACAA 390307 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| ||||||||||| | || | ||| | ||||| || || || Sbjct 390308 CATTCAGAAAGAATCTACACTCCATCTTGTGCTGAGACTTCGTGGTGG 390355 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTG 110330 |||||| || ||||| || ||| | || ||||||||||| || | ||| ||| ||| Sbjct 389900 AATGCAGATTTTTGTGAAGACTCTTACTGGCAAAACCATCACTCTAGAAGTTGAGGCCTC 389959 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | || ||| |||||| || || |||||| | ||| || | Sbjct 389960 A-GACACAATCGAAAATGTCAAAGCCAAGATTCAGGATAAGGAAGGCATTCCCCCAGACC 390018 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| ||| | || | ||| || || ||||| || |||| |||| || | || |||| Sbjct 390019 AACAGAGATTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTGTCCGACTACA 390078 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||||||| | || | ||||| |||| || || |||| Sbjct 390079 ACATTCAAAAAGAATCTACACTTCATCTTGTGTTGCGACTTCGTGGTGGAA 390129 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||||| || ||||||||||| || | ||| ||| || Sbjct 391125 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAAACCATCACTTTGGAAGTTGAGGCTTCA 391184 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| || ||| || || || ||| | || ||||| Sbjct 391185 GACACAATCGAAAATGTGAAAGCCAAAATTCAGGATAAGGAGGGCATTCCTCCAGATCAG 391244 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | ||| |||||||| || || |||| |||| || | || |||||| Sbjct 391245 CAGCGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGACGAACCCTGTCTGACTACAAC 391304 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACT 110490 ||||| || ||||| || | ||| ||||| | ||||| Sbjct 391305 ATTCAGAAGGAATCCACTCTCCACTTGGTGCTTAGACT 391342 >seq242 Length=1788442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGA-AACGGAGCCTG 110330 |||||| ||||| || ||||||||||| || ||||| |||||| |||| | ||||| Sbjct 1569776 AATGCAGATATTCGTGAAAACTTTAACGGGTAAAACAATTACCCTCGAGGTTGAAGCCT- 1569834 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 |||||| | | | || ||| || || ||||| |||||| | || |||| Sbjct 1569835 CTGATACTATTGAAAATGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCTCCTGATC 1569894 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| ||| | |||| ||| || || ||||| ||||||| ||||| | | ||||| | Sbjct 1569895 AACAGAGATTGATTTTTGCTGGAAAGCAGCTAGAGGATGGACGAACACTCTCTGATTATA 1569954 Query 110451 ACATTCAAAAAG 110462 | ||||| |||| Sbjct 1569955 ATATTCAGAAAG 1569966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412716858878456