Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq242 116 6e-21 seq2315 109 9e-19 seq1551 84.2 3e-11 >seq242 Length=1788442 Score = 116 bits (128), Expect = 6e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| |||||| | ||||| ||||| || ||||||||||| | || || ||| | Sbjct 1569778 TGCAGATATTCGTGAAAACTTTAACGGGTAAAACAATTACCCTCGAGGTTGAAGCCTCTG 1569837 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| ||||| ||| || |||||||| || || ||||||| Sbjct 1569838 ATACTATTGAAAATGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCTCCTGATCAAC 1569897 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | |||||||| || || || |||| ||| |||| | | |||||||||| Sbjct 1569898 AGAGATTGATTTTTGCTGGAAAGCAGCTAGAGGATGGACGAACACTCTCTGATTATAATA 1569957 Query 146212 TACAAAAAG 146220 | || |||| Sbjct 1569958 TTCAGAAAG 1569966 >seq2315 Length=138946 Score = 109 bits (120), Expect = 9e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || |||||||| |||||||| | || || |||| | | Sbjct 32994 TGCAGATCTTTGTGAAGACCTTGACAGGAAAGACAATTACATTGGAAGTGGAACCTTCAG 33053 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||||||| || || ||| ||| || || || || || || || | Sbjct 33054 ATACCATTGAGAATGTAAAAGCAAAGATTCAAGATAAGGAGGGAATCCCTCCAGACCAGC 33113 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||||||||||||| || ||||| | || ||| | | || | ||||||| |||| Sbjct 33114 AGAGACTCATTTTTGCTGGCAAACAGCTCGAGGATGGTCGCACACTTTCAGATTACAATA 33173 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || ||||| || ||| | ||||| || Sbjct 33174 TTCAGAAAGAGTCTACTCTGCATTTGGT 33201 Score = 102 bits (112), Expect = 1e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || || |||||||| || || | || || |||| | Sbjct 27132 TGCAAATCTTCGTTAAGACTTTGACTGGAAAAACTATCACCTTGGAAGTGGAACCATCTG 27191 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||||||| || |||||| || ||||| ||||| || ||||| | Sbjct 27192 ATACAATTGAAAATGTAAAAGCAAAGATACAAGACAAGGAAGGTATTCCTCCTGATCAGC 27251 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || ||||| ||||| || | || ||| | || | | ||||| || | Sbjct 27252 AAAGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACACTGTCTGATTACAACA 27311 Query 146212 TACAAAAAG 146220 ||||||||| Sbjct 27312 TACAAAAAG 27320 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || | ||||| ||||| || || | || ||||||| | Sbjct 28023 TGCAGATATTTGTGAAGACCCTCACAGGCAAAACCATCACACTGGAGGTAGAACCATCTG 28082 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||||||||| ||||| ||| |||||||| || ||||| ||||| | Sbjct 28083 ATACCATTGAAAATGTAAAGGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAGC 28142 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | ||||||||||| ||||| || || ||| | | || | | || || |||| Sbjct 28143 AGCGATTAATTTTTGCAGGCAAACAGTTGGAAGATGGTCGCACACTGTCGGACTACAATA 28202 Query 146212 TACAAAAAG 146220 | ||||||| Sbjct 28203 TCCAAAAAG 28211 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || | ||||||||||| || || | || ||||||| | Sbjct 27521 TGCAGATATTTGTGAAGACCCTCACAGGAAAAACCATCACACTGGAGGTAGAACCATCTG 27580 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||||||||| || || ||| |||||||| || ||||| ||||| | Sbjct 27581 ATACCATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCAGATCAGC 27640 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | ||||||||||| ||||| || || ||| | | || | | || || |||| Sbjct 27641 AGCGATTAATTTTTGCAGGCAAACAGTTGGAAGATGGTCGCACACTGTCGGACTACAATA 27700 Query 146212 TACAAAA 146218 | ||||| Sbjct 27701 TTCAAAA 27707 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || | ||||||||||| || || | || ||||||| | Sbjct 28962 TGCAGATATTTGTGAAGACCCTCACAGGAAAAACCATCACACTGGAGGTAGAACCATCTG 29021 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||||||||| || || ||| |||||||| || ||||| || || | Sbjct 29022 ATACCATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCAGACCAGC 29081 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 | || | ||||||||||| ||||| || || ||| Sbjct 29082 AGCGATTAATTTTTGCAGGAAAACAGTTGGAAGAT 29116 >seq1551 Length=444118 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| |||| || ||| ||||| || || ||||||||||| || || ||| Sbjct 25507 GACACGATTAAAAACGTTAAATCCAAAATTCAGAGCAAGGAAGGCATTCCTCCAGACCAA 25448 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||| | || ||||| || || || | || ||| ||||| || |||| || ||| Sbjct 25447 CAGAGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGAAGAACATTGTCAGACTACAAT 25388 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || || |||||||| || | ||| | || || || || ||||| |||| Sbjct 25387 ATTCAGAAAGAATCCACACTTCATCTGGTTTTCCGGTTGAGAGGTGGTA 25339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785922767032640