Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq242 116 6e-21
seq2315 109 9e-19
seq1551 84.2 3e-11
>seq242
Length=1788442
Score = 116 bits (128), Expect = 6e-21
Identities = 139/189 (74%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| |||||| | ||||| ||||| || ||||||||||| | || || ||| |
Sbjct 1569778 TGCAGATATTCGTGAAAACTTTAACGGGTAAAACAATTACCCTCGAGGTTGAAGCCTCTG 1569837
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| ||||||| ||| ||||| ||| || |||||||| || || |||||||
Sbjct 1569838 ATACTATTGAAAATGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCTCCTGATCAAC 1569897
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| ||| | |||||||| || || || |||| ||| |||| | | ||||||||||
Sbjct 1569898 AGAGATTGATTTTTGCTGGAAAGCAGCTAGAGGATGGACGAACACTCTCTGATTATAATA 1569957
Query 146212 TACAAAAAG 146220
| || ||||
Sbjct 1569958 TTCAGAAAG 1569966
>seq2315
Length=138946
Score = 109 bits (120), Expect = 9e-19
Identities = 149/208 (72%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | || || || |||||||| |||||||| | || || |||| | |
Sbjct 32994 TGCAGATCTTTGTGAAGACCTTGACAGGAAAGACAATTACATTGGAAGTGGAACCTTCAG 33053
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| | ||||||||| || || ||| ||| || || || || || || || |
Sbjct 33054 ATACCATTGAGAATGTAAAAGCAAAGATTCAAGATAAGGAGGGAATCCCTCCAGACCAGC 33113
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| |||||||||||||| || ||||| | || ||| | | || | ||||||| ||||
Sbjct 33114 AGAGACTCATTTTTGCTGGCAAACAGCTCGAGGATGGTCGCACACTTTCAGATTACAATA 33173
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| || ||||| || ||| | ||||| ||
Sbjct 33174 TTCAGAAAGAGTCTACTCTGCATTTGGT 33201
Score = 102 bits (112), Expect = 1e-16
Identities = 136/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || || || |||||||| || || | || || |||| |
Sbjct 27132 TGCAAATCTTCGTTAAGACTTTGACTGGAAAAACTATCACCTTGGAAGTGGAACCATCTG 27191
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| ||||||||||| || |||||| || ||||| ||||| || ||||| |
Sbjct 27192 ATACAATTGAAAATGTAAAAGCAAAGATACAAGACAAGGAAGGTATTCCTCCTGATCAGC 27251
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||||| || ||||| ||||| || | || ||| | || | | ||||| || |
Sbjct 27252 AAAGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACACTGTCTGATTACAACA 27311
Query 146212 TACAAAAAG 146220
|||||||||
Sbjct 27312 TACAAAAAG 27320
Score = 98.7 bits (108), Expect = 2e-15
Identities = 135/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | || || | ||||| ||||| || || | || ||||||| |
Sbjct 28023 TGCAGATATTTGTGAAGACCCTCACAGGCAAAACCATCACACTGGAGGTAGAACCATCTG 28082
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||| ||||| ||| |||||||| || ||||| ||||| |
Sbjct 28083 ATACCATTGAAAATGTAAAGGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAGC 28142
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | ||||||||||| ||||| || || ||| | | || | | || || ||||
Sbjct 28143 AGCGATTAATTTTTGCAGGCAAACAGTTGGAAGATGGTCGCACACTGTCGGACTACAATA 28202
Query 146212 TACAAAAAG 146220
| |||||||
Sbjct 28203 TCCAAAAAG 28211
Score = 95.1 bits (104), Expect = 2e-14
Identities = 133/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | || || | ||||||||||| || || | || ||||||| |
Sbjct 27521 TGCAGATATTTGTGAAGACCCTCACAGGAAAAACCATCACACTGGAGGTAGAACCATCTG 27580
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||| || || ||| |||||||| || ||||| ||||| |
Sbjct 27581 ATACCATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCAGATCAGC 27640
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | ||||||||||| ||||| || || ||| | | || | | || || ||||
Sbjct 27641 AGCGATTAATTTTTGCAGGCAAACAGTTGGAAGATGGTCGCACACTGTCGGACTACAATA 27700
Query 146212 TACAAAA 146218
| |||||
Sbjct 27701 TTCAAAA 27707
Score = 86.0 bits (94), Expect = 1e-11
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | || || | ||||||||||| || || | || ||||||| |
Sbjct 28962 TGCAGATATTTGTGAAGACCCTCACAGGAAAAACCATCACACTGGAGGTAGAACCATCTG 29021
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||| || || ||| |||||||| || ||||| || || |
Sbjct 29022 ATACCATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCAGACCAGC 29081
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186
| || | ||||||||||| ||||| || || |||
Sbjct 29082 AGCGATTAATTTTTGCAGGAAAACAGTTGGAAGAT 29116
>seq1551
Length=444118
Score = 84.2 bits (92), Expect = 3e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
|| || ||| |||| || ||| ||||| || || ||||||||||| || || |||
Sbjct 25507 GACACGATTAAAAACGTTAAATCCAAAATTCAGAGCAAGGAAGGCATTCCTCCAGACCAA 25448
Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210
|| ||| | || ||||| || || || | || ||| ||||| || |||| || |||
Sbjct 25447 CAGAGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGAAGAACATTGTCAGACTACAAT 25388
Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
|| || |||||||| || | ||| | || || || || ||||| ||||
Sbjct 25387 ATTCAGAAAGAATCCACACTTCATCTGGTTTTCCGGTTGAGAGGTGGTA 25339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 785922767032640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |