Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2315 152 4e-32 seq783 136 3e-27 seq242 120 2e-22 seq1551 84.2 2e-11 >seq2315 Length=138946 Score = 152 bits (168), Expect = 4e-32 Identities = 150/191 (79%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||||||||||||||| || | || ||||| ||| || || ||||| || || | | Sbjct 26967 CTTTTTGAATGTTATAGTCTGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAAAA 26908 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTT 29715 ||||||| |||||||| || ||||| |||||||||||||| |||||||| ||| ||| | Sbjct 26907 TCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTG-AATTTTTGCTTTTACATTC 26849 Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775 || | || ||||| |||| || ||||| ||||| ||||| ||||| | ||||| ||| Sbjct 26848 TCAATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCACA 26789 Query 29776 AATATCTGCAT 29786 || |||||||| Sbjct 26788 AAAATCTGCAT 26778 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || |||||||| || || || ||||| ||||| || ||||| | | Sbjct 33219 CCACCTCGCAGACGGAGAACCAAATGCAGAGTAGACTCTTTCTGAATATTGTAATCTGAA 33160 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| ||||| |||||||||||| | || | ||| ||||| || || || Sbjct 33159 AGTGTGCGACCATCCTCGAGCTGTTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGAGGG 33100 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| || ||||| ||| |||| ||| ||| | || | || || ||| |||| || Sbjct 33099 ATTCCCTCCTTATCTTG-AATCTTTGCTTTTACATTCTCAATGGTATCTGAAGGTTCCAC 33041 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || || || || || ||||| || ||||| |||||||| Sbjct 33040 TTCCAATGTAATTGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 32993 Score = 132 bits (146), Expect = 4e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 ||||||| ||||| ||||| | | ||||| ||| || || || || |||||| | | Sbjct 27320 CTTTTTGTATGTTGTAATCAGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGA 27261 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 | | |||||||||||| || |||||||| || |||||||||| ||| ||| ||| ||| Sbjct 27260 TAAGTCTTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGTATCTTTGCTTTTACATTTT 27201 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | || ||||| |||| ||||| | || |||||||| ||||| || || ||||| | Sbjct 27200 CAATTGTATCAGATGGTTCCACTTCCAAGGTGATAGTTTTTCCAGTCAAAGTCTTAACGA 27141 Query 29777 ATATCTGCATT 29787 | || |||||| Sbjct 27140 AGATTTGCATT 27130 Score = 131 bits (144), Expect = 1e-25 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 ||||||| || || || |||| | |||||| ||| || | |||||||| ||| | | Sbjct 28211 CTTTTTGGATATTGTAGTCCGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAA 28152 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTT 29715 | |||| |||||||| || || || || ||||||||||| |||||||| || ||| || Sbjct 28151 TTAATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTG-AATTTTTGCCTTTACATTT 28093 Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775 || | || ||||| ||||||| || || || || |||||||| || | ||| || ||| Sbjct 28092 TCAATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTGCCTGTGAGGGTCTTCACA 28033 Query 29776 AATATCTGCAT 29786 ||||||||||| Sbjct 28032 AATATCTGCAT 28022 Score = 122 bits (134), Expect = 7e-23 Identities = 142/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658 |||||||| || || |||| | |||||| ||| || | |||||||| ||| | || Sbjct 27707 TTTTGAATATTGTAGTCCGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAATT 27648 Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTC 29717 |||| |||||||| || || || || ||||||||||| ||| |||| || ||| |||| Sbjct 27647 AATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTG-AATCTTTGCCTTTACATTTTC 27589 Query 29718 TACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 | || ||||| ||||||| || || || || ||||| || || | ||| || ||||| Sbjct 27588 AATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAAA 27529 Query 29778 TATCTGCAT 29786 ||||||||| Sbjct 27528 TATCTGCAT 27520 Score = 109 bits (120), Expect = 4e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658 |||||||| || || |||| | ||||| ||| || | ||||| || ||| | || Sbjct 29148 TTTTGAATATTGTAGTCCGACAGTGTGCGGCCATCTTCCAACTGTTTTCCTGCAAAAATT 29089 Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTC 29717 |||| ||||| || || || || || ||||||||||| ||| |||| || ||| |||| Sbjct 29088 AATCGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTG-AATCTTTGCCTTTACATTTTC 29030 Query 29718 TACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 | || ||||| ||||||| || || || || ||||| || || | ||| || ||||| Sbjct 29029 AATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAAA 28970 Query 29778 TATCTGCAT 29786 ||||||||| Sbjct 28969 TATCTGCAT 28961 >seq783 Length=580412 Score = 136 bits (150), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| ||| | |||||| || ||||||||||||||||| || || | | ||| || | Sbjct 390115 CGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGACAGGGTTCGTCCA 390056 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| ||| | |||||||| || || || || ||||| || || || Sbjct 390055 TCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTA 389996 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | ||||||| |||| | ||||| || || ||||| ||||| || Sbjct 389995 TCCTG-AATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAACTTCTAGAGTGAT 389937 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||||| | || || ||||| ||||||||| Sbjct 389936 GGTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCATT 389900 Score = 136 bits (150), Expect = 3e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615 ||| || ||||| | | |||||||| || || |||||||| || |||||||| || || Sbjct 391355 TTGGCCACCCCTGAGTCTAAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTC 391296 Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 | | ||| || ||| || |||||||| |||||| | || | | |||||||| || Sbjct 391295 AGACAGGGTTCGTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGG 391236 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTT 29734 ||||| ||||| || || || |||||| | ||| ||| |||| | ||||| ||| | Sbjct 391235 AGGAATGCCCTCCTTATCCTG-AATTTTGGCTTTCACATTTTCGATTGTGTCTGAAGCCT 391177 Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| | ||| || ||||||||||| || || || || || |||||||| Sbjct 391176 CAACTTCCAAAGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 391125 Score = 95.1 bits (104), Expect = 9e-15 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||||||||||||| | || ||||| || || || || ||||| ||||||||| Sbjct 387212 TCTTCCAATTGTTTGCCAGCAAAGATTAATCTCTGTTGGTCTGGAGGAATTCCCTCTTTG 387153 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | || || | || | || || ||| ||| ||||| || || || Sbjct 387152 TCTTG-AATCTTAGCCTTCACGTTCTCAATGGTATCTGAAGCTTCAACTTCTAGGGTGAT 387094 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| || || | ||| || || || |||||||| Sbjct 387093 AGTTTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 387058 >seq242 Length=1788442 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||| ||||| |||||||| | | || || ||| || || || || |||||| | | Sbjct 1569966 CTTTCTGAATATTATAATCAGAGAGTGTTCGTCCATCCTCTAGCTGCTTTCCAGCAAAAA 1569907 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 ||||||| || ||||| || || || || || |||||||| | ||| ||| ||| ||| Sbjct 1569906 TCAATCTCTGTTGATCAGGAGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTCACATTTT 1569847 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | ||| ||||| ||| || || || || || ||||| || ||||| ||||| || | Sbjct 1569846 CAATAGTATCAGAGGCTTCAACCTCGAGGGTAATTGTTTTACCCGTTAAAGTTTTCACGA 1569787 Query 29777 ATATCTGCATT 29787 ||||||||||| Sbjct 1569786 ATATCTGCATT 1569776 >seq1551 Length=444118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 |||||||| |||||| | || | | |||||||| || || || ||| | || || || Sbjct 25191 AGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGTATGCCCGCCTTATCCTGG 25250 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | ||| ||| ||| |||| | ||||| ||| || ||||| | ||| || |||||| Sbjct 25251 ATTTTGGCTTTTACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTTTG 25310 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || |||||||| Sbjct 25311 CCAGTCAAAGTCTTGACGAAAATCTGCAT 25339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385102805055672