Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq1604 91.5 2e-13 seq4222 84.2 2e-11 seq1752 84.2 2e-11 seq1094 82.4 8e-11 >seq1604 Length=351056 Score = 91.5 bits (100), Expect = 2e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 154518 CAGTAGCTCAGATGGATAGAGCAACTGCCTTCTAAGCAGTCGGCCACAGGTTCGAGTCCT 154577 ||||||||||| |||||||||||||||||||||||||||| || | ||||||||| |||| Sbjct 255407 CAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCT 255348 Query 154578 GTCTG 154582 | ||| Sbjct 255347 GACTG 255343 >seq4222 Length=21366 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 154520 GTAGCTCAGATGGATAGAGCAACTGCCTTCTAAGCAGTCGGCCACAGGTTCGAGTCCTGT 154579 ||||||||| ||||||||||||| ||||||||||| || || ||||||||||| |||||| Sbjct 17754 GTAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCACAGGTTCGAATCCTGT 17813 Query 154580 C 154580 | Sbjct 17814 C 17814 >seq1752 Length=186427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 154520 GTAGCTCAGATGGATAGAGCAACTGCCTTCTAAGCAGTCGGCCACAGGTTCGAGTCCTG 154578 ||||||||| |||||||||||||||||||||||||||| || | ||||||||| ||||| Sbjct 14697 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCTG 14639 >seq1094 Length=2708314 Score = 82.4 bits (90), Expect = 8e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 154518 CAGTAGCTCAGATGGATAGAGCAACTGCCTTCTAAGCAGTCGGCCACAGGTTCGAGTCCT 154577 ||||||||||| ||||||||||||| ||||||||| || || ||||||||||| |||| Sbjct 606441 CAGTAGCTCAGCTGGATAGAGCAACGCCCTTCTAAGGCGTGGGTCACAGGTTCGAATCCT 606500 Query 154578 GTCTG 154582 ||||| Sbjct 606501 GTCTG 606505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545104619711360