Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq21956 143 6e-30 >seq21956 Length=1105 Score = 143 bits (158), Expect = 6e-30 Identities = 288/419 (69%), Gaps = 16/419 (4%) Strand=Plus/Minus Query 971 GTAGTGCGCCGTCATCTCGATGCCGGTCCAGTTG--TACCCCTCGGCATCCGCG--GCCA 1026 |||||| |||| || ||||||||| | | | | || ||||| || |||| || Sbjct 925 GTAGTGGGCCGACAGCTCGATGCC--TACGGCGGGATAGCCCTC--CAGGCGCGCTGCTT 870 Query 1027 CCAGGGTGGTGCCAGAACCGGCGAACGGGTCGAGGATGCGGCCGCCCTCCTCACAGATGC 1086 ||| |||||||| | |||||||| ||||| |||||| ||||||| ||| ||| Sbjct 869 CCACCGTGGTGCCCGCCCCGGCGAAGGGGTCCAGGATGATGCCGCCCGGCTCCACGATCT 810 Query 1087 GCACAAGCTGGCGCATGAGATCGGTCGGCTTGCCAGTGAGGTG---GTGCTTGTCCGCTC 1143 ||| | || ||||| | || |||||| | || |||| | ||||| | | Sbjct 809 TCACGATCTCCCGCATCACCTCCAGCGGCTTCTCGGTCTGGTGTCTGCGCTTGGG-GAGC 751 Query 1144 TACG-CACGGCCTCGCGGAAAACACCCGGCAGCGTGGGTGCCGCCCGGCCCAGCGGCATC 1202 | | || || || ||||| ||||||||||| | || ||| ||| | ||||| Sbjct 750 GAGGGCATGGACTGCCGGAACACACCCGGCAGGATCGGCGCCTTGCGGTCGGCGGGCATG 691 Query 1203 CCGCCCTTGCTGCCCCACACAACGTACTCGGGCTGGTTGGAGAAGCGGCCACGCTGCGGT 1262 ||| |||||||||||||| ||| |||| | ||| | | ||| || || ||||| || Sbjct 690 TGGCCGTTGCTGCCCCACACCACGAACTCCGCCTGCTGGCGGAACCGCCCGCGCTGGGGG 631 Query 1263 CGCACGCCGCCCGTCTTGTCCCACACCGCCACACCGCGCCAGATGAAGCCGGCGCACTGC 1322 || || | ||||||||||| || ||| || ||||| || ||||||| || ||| Sbjct 630 CG---GCAGTTGGTCTTGTCCCAGGCCAGCACGCCCCGCCAAATCCAGCCGGCCCATTGC 574 Query 1323 AGCGCGTCGGTAGTCAGCGGCAGCTGCCTCCAGTCGGTGAACAGCAACACGGGCGCGCC 1381 || |||||||| | || ||||||| ||||||| |||||| | | ||||||||| Sbjct 573 AGGGCGTCGGTCATGCTGGGGAGCTGCCGCCAGTCGATGAACATGCAGATGGGCGCGCC 515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107126852031248