Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_023614.1 Length=43153 Score E Sequences producing significant alignments: (Bits) Value seq14302 114 4e-21 seq2029 111 4e-20 seq6928 80.6 7e-11 >seq14302 Length=8876 Score = 114 bits (126), Expect = 4e-21 Identities = 181/258 (70%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 30870 GCGGTTGCTCGGATATTCCGTCCGGGATGTAAATACGATTTAGTTTTAACTTTGGTAGGG 30929 || |||||||| || | ||| || |||||||| || |||| || ||| | || ||| Sbjct 8830 GCCGTTGCTCGCATTTACCGGCCCGGATGTAAGTATGATTATGTGTTAGTAATAGTTGGG 8771 Query 30930 GATCAGGGTACCGGTAAAAGTACC---CTCGCCAAAAAATTAGGTGGGAAATGGTTTTCC 30986 || || |||| || ||||||||| || ||| | | ||||| | |||||| | Sbjct 8770 GACCAAGGTATAGGAAAAAGTACCACACTTGCCCGTA---TGGGTGGTGATTGGTTTAGC 8714 Query 30987 GATACCTTTATGACCGTACACGGTAAAGAGGCGTTGGAACAGATACAAGGGGCCTGGATT 31046 |||| | ||| |||| | |||||||| || || ||| ||||||||| | ||| || Sbjct 8713 GATAGCGTTACGACCCTTACGGGTAAAGAAGCCTTAGAAAGCATACAAGGGTCTTGGCTT 8654 Query 31047 ATAGAAATGGCCGAACTTTCAGGACTGCGTAAAGCTGAGGTCGAAGCGGTTAAACATTTC 31106 || || | | |||||| | || | ||||||||||| || || || ||||| || ||| Sbjct 8653 ATTGAGTTAGGAGAACTTGCCGGGTTACGTAAAGCTGAAGTAGACGCAGTTAAGCACTTC 8594 Query 31107 ATATCTAAACAAGAGGAC 31124 || |||| |||| ||| Sbjct 8593 GTAAGTAAAAAAGAAGAC 8576 >seq2029 Length=231691 Score = 111 bits (122), Expect = 4e-20 Identities = 181/256 (71%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 37533 AGGCAGTCCGTGTCAGGG--TTTCAGTTTTGCAGGGAAACAATTAAATTTCGACGACCCT 37590 ||| ||||| |||||||| ||||| |||||||| ||||| | ||| || || ||| Sbjct 195971 AGGAAGTCCATGTCAGGGGTTTTCA--TTTGCAGGTAAACAGCTTGCTTTTGATGATCCT 195914 Query 37591 CGCAGTATGTTATTTTTTGAGTTTGTCAGGATTCTGGACGAGGTTCGAGAAATTAATCCA 37650 || | | | ||||||| |||||| ||||| || | | || | ||||| Sbjct 195913 CGTTCAAAGCTGTTTTTTGTGTTTGTGGATATTCTCAACCATATACGTTCCTTAAATCCT 195854 Query 37651 GACGTTAAATTCTTACTGGAAAATGTGAGAATGAAAAAAGAGTACCAAAATGTCATTTCT 37710 || || || || |||||||||||||| | ||||| |||||||||||| | || ||| || Sbjct 195853 GATGTGAAGTTTTTACTGGAAAATGTTCGTATGAAGAAAGAGTACCAACAGGTGATTACT 195794 Query 37711 GAGTAC-ATGGGTGTACAACCTATCGAGGTTAATTCCGCGTTGGTTTCAGCCCAAAACAG 37769 || ||| ||||| ||| || ||| | | ||| ||| | || ||||| ||| | | Sbjct 195793 GA-TACGATGGGGGTAGAAAGTATGCTGATAAATAGTGCGCTAGTATCAGCACAAGATCG 195735 Query 37770 GAAACGACTATATTGG 37785 |||||| |||||||| Sbjct 195734 TAAACGATTATATTGG 195719 >seq6928 Length=39225 Score = 80.6 bits (88), Expect = 7e-11 Identities = 95/126 (75%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 38302 AAACTGACACCGATTGAGTGCGAACGTCTGCAAACCGTGCCCGACCATTACACGGATTGC 38361 ||||||||||||||||| || ||||| |||| || |||| ||| |||||| | || Sbjct 25385 AAACTGACACCGATTGAATGTGAACGCTTGCAGACACTGCCGGACGGTTACACTGCCGGC 25326 Query 38362 GTAAGTAATTCACAGCGTTATAAGATGC-TCGGTAATGGTTGGACAGTTGACGTAATCGC 38420 | || ||| ||||||| ||||| |||| | || || || ||||||| || || ||| Sbjct 25325 ATCAGCAATACACAGCGGTATAA-ATGCTTGGGCAACGGCTGGACAGCCGAGGTTATCAT 25267 Query 38421 ACACAT 38426 |||||| Sbjct 25266 ACACAT 25261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137927381530960