Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq783 113 4e-20 seq2315 109 5e-19 seq1551 100 3e-16 >seq783 Length=580412 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 137273 || ||||| || || |||||||| || || || | || | ||||| ||||||||||| Sbjct 391321 GTGGATTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGTCCA-TCTTCAAGTTGTTTACC 391263 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 |||| |||| ||||| |||||||| ||||| ||||| || || || |||||| ||| Sbjct 391262 AGCAAAGATAAGACGCTGCTGATCTGGAGGAATGCCCTCCTTATCCTGAATTTTGGCTTT 391203 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | ||| | ||||||| | || ||||| | ||| | || ||||| ||||| || Sbjct 391202 CACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTTTGCCAGTCAAAGT 391143 Query 137394 TTTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 391142 CTTGACGAAAATCTGCATA 391124 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 137255 ||||| || | ||||| ||||||||||||||| |||||||| ||| || || | || | Sbjct 390115 CGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGACAGGGTTCGTCCA 390056 Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 ||||| || || || || ||| |||||| | || || || || || |||||||| || Sbjct 390055 -TCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTT 389997 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 || ||| || ||| | | ||| | ||||||| || || ||||| | ||| | Sbjct 389996 ATCCTGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAACTTCTAGAGTGAT 389937 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || ||||| || | || || || || || ||||| Sbjct 389936 GGTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 389901 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 137208 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCG--AGTCTTCGAGT 137265 ||| | |||||||||||| || |||||||||| || | | | ||| ||| ||||| Sbjct 390332 ATGGAGTGTAGATTCTTTCTGAATGTTGTAAT--CTGAAAGAGTTCGGCCGTCCTCGAGC 390275 Query 137266 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATT 137325 || || |||||| |||||| | || || || || || |||||||| ||||| |||| Sbjct 390274 TGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATT 390215 Query 137326 TTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 137385 || ||| | | || | ||| || | | || ||||| | ||| | || || ||| Sbjct 390214 TTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGACTTCCAAAGTAATAGTTTTCCCG 390155 Query 137386 GTCAATGTTTTTACGAATATTTGCAT 137411 || | |||||||| || || ||||| Sbjct 390154 GTAAGAGTTTTTACAAAAATCTGCAT 390129 >seq2315 Length=138946 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 137222 CTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGA 137281 ||||||||||||||||||| || ||||| || || || || ||||||||| ||| Sbjct 27320 CTTTTTGTATGTTGTAATCAGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGA 27261 Query 137282 TCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTT 137341 | || | ||||||||| ||||| || ||||| ||||| || ||| ||||| | || Sbjct 27260 TAAGTCTTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGTATCTTTGCTTTTACATTTT 27201 Query 137342 CCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGA 137401 | | || || | ||||| ||||| | || | || || || ||||| || || |||| Sbjct 27200 CAATTGTATCAGATGGTTCCACTTCCAAGGTGATAGTTTTTCCAGTCAAAGTCTTAACGA 27141 Query 137402 ATATTTGCAT 137411 | |||||||| Sbjct 27140 AGATTTGCAT 27131 >seq1551 Length=444118 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 ||||||||||||||| |||| ||||| |||||||| ||||||||||| | || || Sbjct 25191 AGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGTATGCCCGCCTTATCCTGG 25250 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 ||||| ||||| | ||| | ||||||| | || ||||| | ||| | || ||| Sbjct 25251 ATTTTGGCTTTTACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTTTG 25310 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCATA 137412 || ||||| || || ||||| || |||||| Sbjct 25311 CCAGTCAAAGTCTTGACGAAAATCTGCATA 25340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488392600214400