Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq39 102 8e-17 seq123 98.7 1e-15 seq1206 91.5 2e-13 >seq39 Length=3240425 Score = 102 bits (112), Expect = 8e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 84285 TTTTCTAAACGCGTCCAATGAAAATAATTTTTTCCTCCTTGATTACATAATTTAGTTGCG 84344 |||||||| ||| |||| | | | ||| || || || |||||||||||| || Sbjct 2060303 TTTTCTAATCGCATCCAGTTTCTAAATCGTTTACCGCCACTATGACATAATTTAGTAGCA 2060362 Query 84345 TTAAAATACCCAGTAACCTTATCTATGACCAATTTAAACTCTCCAAAGAGACCATAATAA 84404 |||||| | ||||| ||||||||| ||||| ||||| ||||||||||||||||| || Sbjct 2060363 TTAAAACATCCAGTCGACTTATCTATAACCAAATTAAAATCTCCAAAGAGACCATACCAA 2060422 Query 84405 AAGGTGTCTTTAATGTGTTCAAAGCATATAT 84435 | |||||| || |||||| | |||| || Sbjct 2060423 TACTGGTCTTTGATTTGTTCATAACATACAT 2060453 >seq123 Length=2135277 Score = 98.7 bits (108), Expect = 1e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 84299 CCAATGAAAATAATTTTTTCCTCCTTGATTACATAATTTAGTTGCGTTAAAATACCCAGT 84358 ||||||||| |||| ||||| || | |||||||| ||||| ||||| ||||| ||||| Sbjct 576822 CCAATGAAAGAAATTCTTTCCACCATCTTTACATAACTTAGTGGCGTTGAAATATCCAGT 576881 Query 84359 AACCTTATCTATGACCAATTTAAACTCTCCAAAGAGACCATA 84400 | |||||||| |||| || || ||||||||||||||||| Sbjct 576882 AGATTTATCTATAACCAGCTTGAAATCTCCAAAGAGACCATA 576923 >seq1206 Length=549353 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 84318 CCTCCTTGATTACATAATTTAGTTGCGTTAAAATACCCAGTAACCTTATCTATGACCAAT 84377 ||||| |||||||||||| || || |||||| | |||||| |||||||||||||| Sbjct 366503 CCTCCACTATTACATAATTTGGTAGCATTAAAACAACCAGTAGACTTATCTATGACCAGA 366444 Query 84378 TTAAACTCTCCAAAGAGACCATAATAAAAGGTGTCTTTAATGTGTTCAAAGCATATAT 84435 ||||| | ||||||||||||||| || | ||||| || |||| | | |||| || Sbjct 366443 TTAAATTTTCCAAAGAGACCATACCAATACTGATCTTTGATTTGTTTATAACATAAAT 366386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521383973018560