Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_024359.1 Length=133048 Score E Sequences producing significant alignments: (Bits) Value seq2441 93.3 4e-14 >seq2441 Length=2995558 Score = 93.3 bits (102), Expect = 4e-14 Identities = 189/279 (68%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 23233 TCATCTAATGTAGACTCCAACACAGAGGAAGACCAAACATCTTTCATTGTATTCTTAAAA 23292 ||||| | |||||| || | || |||| ||| ||| ||| ||| ||| |||| Sbjct 370404 TCATCCAGTGTAGATTCGCATACGGAGGTAGAATAAATTCCTTCCATCTCATTTCTAAAT 370463 Query 23293 TCTTCCATTTCTAGTGTTTCTTTA--GCTTTAGAGCGGGACAGTACCCTACCTGCTCCAT 23350 || | ||| || || || ||| | |||| | || | ||||| || ||||| |||| Sbjct 370464 TCATTCATATCAAGGGT--CTTAAATGCTTGATTACGTGCCAGTATTCTTCCTGCCCCAT 370521 Query 23351 GAGGTGCTGAATTGTTCCAGTCTTCGTTTCCCTTTCCTGTGGCAATAATGCTACCATCAC 23410 | || || ||| ||||||||||| || | |||||| | ||| | |||||| | Sbjct 370522 GTGGAGCCGAACAGTTCCAGTCTTTATTGCTTTTTCCTTCGCAAATCAACAAACCATCGC 370581 Query 23411 GCATATTTAGTGGGATAACTAGTTGTTTTCCTTTAGAGGCATCTGTCGCACCTTTACGAA 23470 ||||||| | ||||||| | | || || ||| | ||| | | |||||||| |||| Sbjct 370582 GCATATTGAAAGGGATAATCATCTTTTCACCCTTATAAGCACGTATAGCACCTTTTCGAA 370641 Query 23471 TAACCTTATTAGGGATGTCAATATAATTATGAATAGAGT 23509 ||| | | | | | |||||| ||||||| || |||| Sbjct 370642 TAATCCAGTCACGTGTATCAATAAAATTATGCATCGAGT 370680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425500195194008