Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_024387.1 Length=43767 Score E Sequences producing significant alignments: (Bits) Value seq1702 111 4e-20 seq1191 102 2e-17 >seq1702 Length=707479 Score = 111 bits (122), Expect = 4e-20 Identities = 255/370 (69%), Gaps = 23/370 (6%) Strand=Plus/Plus Query 28603 GAAAATACTAGATGCTTGTTGCGGCAGCAGAATGTTCTGGTTTAACCGCACAAATAAAAA 28662 ||||||| |||| || ||||| |||||| | |||||||||||||| ||| |||| Sbjct 667628 GAAAATATTAGACGCCTGTTGTGGCAGCCGTATGTTCTGGTTTAAT-----AAACAAAAT 667682 Query 28663 CGTTACGT-TTATGGACA-ATAGAGAGCTTGAA-ACTGAATTGT--GCGATGGCAGGAAA 28717 | | || |||| || ||| | | ||| || ||| | ||||||||||| | Sbjct 667683 CCCAATGTCTTATTTGCAGATAAACGGACAGAAGACCATATTCTCTGCGATGGCAGGCAT 667742 Query 28718 TTAGTCGTAAAGCCTGATGTAGTAGCAGATTTTAGGAGTATGCCATTCGATACTAATACA 28777 || | ||||||||||| | | | ||||| | | |||||| | || ||||||| Sbjct 667743 TTGGAAATAAAGCCTGATATCGAAATGGATTTCACCAATATGCCTATTGAAGATAATACA 667802 Query 28778 TTTCACTTAGTAGTTTTTGATCCACCGCATTTGCTCAAAGCAGGTGATAAA--TCATGGT 28835 ||| | | || || |||||||| |||||||| | || | || || ||| || ||| Sbjct 667803 TTTGCCCTTGTCGTGTTTGATCCGCCGCATTT-AGCGAAACTGG-GACAAAGCTCGTGGA 667860 Query 28836 TGGCCAAGAAATATGG-GAAGTTGGATTTGCTAACTTGG--AGAGATGATATAAGTAAGG 28892 |||| |||||||| || | | || || ||| |||| | | ||||| | | | | Sbjct 667861 TGGCAAAGAAATACGGTGTACTT---CCTGATAA-TTGGCCAAGGGTGATACA--TGACG 667914 Query 28893 GTTTTGAAGAATGTATGCGAGTTTTGAAACCAAATGGCACATTAATTTTCAAATGGAACG 28952 | ||| |||| |||||| |||| ||||| | |||| | |||||| ||||||||||| | Sbjct 667915 GATTTAAAGAGTGTATGAGAGTGCTGAAAAAAGATGGGATATTAATCTTCAAATGGAATG 667974 Query 28953 AAGACCAAAT 28962 || ||||| Sbjct 667975 AAACACAAAT 667984 >seq1191 Length=1801643 Score = 102 bits (112), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 11/208 (5%) Strand=Plus/Minus Query 28787 GTAGTTTTTGATCCACCGCATTTGCTCAAAGCA----GGTGATAAATCATGGTTGGCCAA 28842 || ||||| || || || ||||| |||||| || || | ||||||| | || || Sbjct 1470057 GTTGTTTTCGACCCTCCACATTT----AAAGCAACTTGGAGAAACATCATGGCTCGCAAA 1470002 Query 28843 GAAATATGGGAAGTTGGATTTGCTAACTTGGAGAGATGATATAAGTAAGGGTTTTGAAGA 28902 |||||||| ||| || | | |||| | || || | ||||| || || ||||| || Sbjct 1470001 AAAATATGGCAAGCTGCCT--GACAACTGGCAG-GAAGTAATAAGAAAAGGATTTGATGA 1469945 Query 28903 ATGTATGCGAGTTTTGAAACCAAATGGCACATTAATTTTCAAATGGAACGAAGACCAAAT 28962 ||||||||| || || || |||||||| | | |||||||||||||||||| | | || Sbjct 1469944 ATGTATGCGTGTATTAAAGCCAAATGGAGCTCTTATTTTCAAATGGAACGAACATGAGAT 1469885 Query 28963 AAAGCTAAGCGAGATTTTAAAGATAATT 28990 |||| | || ||||| || | || ||| Sbjct 1469884 AAAGGTCAGAGAGATACTAGATATTATT 1469857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139891603084016