Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2315 232 1e-55 seq783 176 9e-39 seq242 159 7e-34 seq1551 134 3e-26 seq957 91.5 3e-13 seq779 89.7 1e-12 >seq2315 Length=138946 Score = 232 bits (256), Expect = 1e-55 Identities = 188/228 (82%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||| || ||| ||||| || ||||||||||| |||||||| ||||| ||||| || Sbjct 33220 ACCACCTCGCAGACGGAGAACCAAATGCAGAGTAGACTCTTTCTGAATATTGTAATCTGA 33161 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | ||| || || || ||||| |||||||| || ||||| || || |||||||| Sbjct 33160 AAGTGTGCGACCATCCTCGAGCTGTTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGAGG 33101 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||| || Sbjct 33100 GATTCCCTCCTTATCTTGAATCTTTGCTTTTACATTCTCAATGGTATCTGAAGGTTCCAC 33041 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || ||||| |||||||| ||||| ||||| |||||||| Sbjct 33040 TTCCAATGTAATTGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 32993 Score = 174 bits (192), Expect = 3e-38 Identities = 153/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| ||||| || |||||||| || | | || || || || || || |||||||||| Sbjct 27320 CTTTTTGTATGTTGTAATCAGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGA 27261 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | |||||||| ||||| ||||| || |||||||| ||||| ||||||||||||||||||| Sbjct 27260 TAAGTCTTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGTATCTTTGCTTTTACATTTT 27201 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| |||||| ||||| |||||||| || || || || || ||||| ||||| || | Sbjct 27200 CAATTGTATCAGATGGTTCCACTTCCAAGGTGATAGTTTTTCCAGTCAAAGTCTTAACGA 27141 Query 82801 ATATCTGCATT 82811 | || |||||| Sbjct 27140 AGATTTGCATT 27130 Score = 158 bits (174), Expect = 2e-33 Identities = 149/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || ||||| || || || || | | ||| ||||| | ||||| || ||||| | Sbjct 28211 CTTTTTGGATATTGTAGTCCGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAA 28152 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 ||| || || |||||||| || |||||||| || |||||||| ||||| |||||||||| Sbjct 28151 TTAATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCCTTTACATTTT 28092 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| |||||| |||||||| |||| || || || |||||||| | ||||| |||| Sbjct 28091 CAATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTGCCTGTGAGGGTCTTCACAA 28032 Query 82801 ATATCTGCAT 82810 |||||||||| Sbjct 28031 ATATCTGCAT 28022 Score = 154 bits (170), Expect = 3e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || ||||| || || || || | | ||| ||||| | ||||| || ||||| ||| Sbjct 27707 TTTTGAATATTGTAGTCCGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAATT 27648 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | || || |||||||| || |||||||| || |||||||||||||| |||||||||||| Sbjct 27647 AATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTTTCA 27588 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || |||||| |||||||| |||| || || || || ||||| | ||||| |||||| Sbjct 27587 ATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAAAT 27528 Query 82803 ATCTGCAT 82810 |||||||| Sbjct 27527 ATCTGCAT 27520 Score = 150 bits (166), Expect = 4e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || ||||| || || || || | | || ||||| | |||||||| ||||| ||| Sbjct 29148 TTTTGAATATTGTAGTCCGACAGTGTGCGGCCATCTTCCAACTGTTTTCCTGCAAAAATT 29089 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | || || || ||||| || |||||||| || |||||||||||||| |||||||||||| Sbjct 29088 AATCGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTTTCA 29029 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || |||||| |||||||| |||| || || || || ||||| | ||||| |||||| Sbjct 29028 ATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAAAT 28969 Query 82803 ATCTGCAT 82810 |||||||| Sbjct 28968 ATCTGCAT 28961 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || || ||||| || || || | | || ||||| || ||||| || || || | Sbjct 26967 CTTTTTGAATGTTATAGTCTGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAAAA 26908 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | | ||| || ||||| ||||| || || || || |||||||| |||||||||||||| | Sbjct 26907 TCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGAATTTTTGCTTTTACATTCT 26848 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| |||||| ||||| || || | ||||| || || || || | || || |||| Sbjct 26847 CAATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCACAA 26788 Query 82801 ATATCTGCAT 82810 | |||||||| Sbjct 26787 AAATCTGCAT 26778 >seq783 Length=580412 Score = 176 bits (194), Expect = 9e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| ||||| ||||| ||||| || || || ||||| || ||| || ||| Sbjct 391336 AGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGTCCATCT 391277 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || |||||||| ||||||||||| || | || ||||||||||| || || |||||||| Sbjct 391276 TCAAGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGAATGCCCTCCTTATCC 391217 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 ||||| || ||||| |||||||| || || || || || ||||||||||| || || Sbjct 391216 TGAATTTTGGCTTTCACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTT 391157 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||| ||||| || || |||||||| Sbjct 391156 TTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 391125 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || |||||||||||||| || || ||||| || ||| ||| ||||| || || || Sbjct 390331 TGGAGTGTAGATTCTTTCTGAATGTTGTAATCTGAAAGAGTTCGGCCGTCCTCGAGCTGC 390272 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | ||| ||||| ||||| || || |||||||| || ||||| || Sbjct 390271 TTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATTTTG 390212 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| || |||||||| || || ||||||||||| || || || || || Sbjct 390211 GCTTTGACATTCTCGATCGTATCCGAAGCCTCGACTTCCAAAGTAATAGTTTTCCCGGTA 390152 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | || |||||||| ||||||||| Sbjct 390151 AGAGTTTTTACAAAAATCTGCATT 390128 Score = 163 bits (180), Expect = 6e-35 Identities = 150/190 (79%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 ||||||||||||| || || || || |||| |||||||| | |||||| |||||||||| Sbjct 387247 CTTTCTGTATATTGTAGTCTGACAGCGTTCTTCCGTCTTCCAATTGTTTGCCAGCAAAGA 387188 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 ||| ||| ||||| |||||||| ||||| || || ||||||||||| || || || || | Sbjct 387187 TTAATCTCTGTTGGTCTGGAGGAATTCCCTCTTTGTCTTGAATCTTAGCCTTCACGTTCT 387128 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| ||||| || ||| ||||| | || || || || ||||||| ||||| || | Sbjct 387127 CAATGGTATCTGAAGCTTCAACTTCTAGGGTGATAGTTTTCCCTGTCAGGGTCTTCACGA 387068 Query 82801 ATATCTGCAT 82810 | |||||||| Sbjct 387067 AAATCTGCAT 387058 Score = 147 bits (162), Expect = 4e-30 Identities = 157/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || ||||||||||| || || || || || || || ||| || ||||| || || Sbjct 390103 TGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGACAGGGTTCGTCCATCTTCAAGCTGC 390044 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| | ||| ||||| ||||| || || ||||||||||| |||||||| Sbjct 390043 TTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTATCCTGAATCTTG 389984 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 ||||| |||||||| || || || | ||| || ||||| | ||| || || ||||| || Sbjct 389983 GCTTTGACATTTTCGATTGTGTC-TGAGGCCTCAACTTCTAGAGTGATGGTTTTGCCAGT 389925 Query 82787 CAACGTCTTTACAAATATCTGCATT 82811 | ||||| ||||| ||||||||| Sbjct 389924 AAGAGTCTTCACAAAAATCTGCATT 389900 Score = 140 bits (154), Expect = 6e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 ||||||| ||||| || || || ||| | || || || ||||| || || |||||||||| Sbjct 390546 CTTTCTGAATATTGTAGTCTGACAGAGTCCTTCCATCCTCTAGCTGCTTGCCAGCAAAGA 390487 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | | ||| ||||| ||||| || || |||||||| || |||||||| ||||| || |||| Sbjct 390486 TCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTTT 390427 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 | ||||| || || || ||||||||||| || || || || || | || || || | Sbjct 390426 CGATCGTGTCTGAAGCCTCGACTTCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCACGA 390367 Query 82801 ATATCTGCAT 82810 | |||||||| Sbjct 390366 AAATCTGCAT 390357 >seq242 Length=1788442 Score = 159 bits (176), Expect = 7e-34 Identities = 151/193 (78%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 ||||||| |||||||||||||| || ||| || || ||||| || ||||||||||| | Sbjct 1569966 CTTTCTGAATATTATAATCAGAGAGTGTTCGTCCATCCTCTAGCTGCTTTCCAGCAAAAA 1569907 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | | ||| |||||||| ||||| || |||||||| ||||| || || ||||| ||||||| Sbjct 1569906 TCAATCTCTGTTGATCAGGAGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTCACATTTT 1569847 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| |||||| | ||| || || | || || || || || || || || || || | Sbjct 1569846 CAATAGTATCAGAGGCTTCAACCTCGAGGGTAATTGTTTTACCCGTTAAAGTTTTCACGA 1569787 Query 82801 ATATCTGCATTAT 82813 ||||||||||||| Sbjct 1569786 ATATCTGCATTAT 1569774 >seq1551 Length=444118 Score = 134 bits (148), Expect = 3e-26 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 |||||||| ||||||||||| || | || |||||||||||||| || ||||||| || Sbjct 25191 AGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGTATGCCCGCCTTATCCTGG 25250 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || || |||||||||||||| || || || || || ||||||||||| || || ||| Sbjct 25251 ATTTTGGCTTTTACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTTTG 25310 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| || || |||||||| Sbjct 25311 CCAGTCAAAGTCTTGACGAAAATCTGCAT 25339 Score = 116 bits (128), Expect = 7e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| || | ||| | || || || ||||||||||| ||||| || || | Sbjct 25339 TACCACCTCTCAACCGGAAAACCAGATGAAGTGTGGATTCTTTCTGAATATTGTAGTCTG 25398 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | |||| || || || || || || || |||||||| | ||| ||||| ||||||| Sbjct 25399 ACAATGTTCTTCCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGAG 25458 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| || | ||| || |||| |||||| || || || | Sbjct 25459 GAATGCCTTCCTTGCTCTGAATTTTGGATTTAACGTTTTTAATCGTGTCTGAAGCCTCGA 25518 Query 82762 CTTCCAA 82768 ||||||| Sbjct 25519 CTTCCAA 25525 >seq957 Length=827651 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 198515 AGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATT 198574 ||||||||||||||| || || || | ||||||| || ||| ||| |||| || || Sbjct 417168 AGGTTGTATGTGGTCAATATGTGGCATTCATGATCAAGGTTGGGCAGAGCGACCGATTTT 417227 Query 198575 TGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCATT 198634 ||||||||| | || ||||||||||| |||| || | ||||||||| | ||||| | Sbjct 417228 TGGGAAGATTCGTTACATGAATTATGAAGGTTGCAAAAGGAAATTTGATATAGCTGCCTA 417287 Query 198635 TAT 198637 ||| Sbjct 417288 TAT 417290 >seq779 Length=683570 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||||||||||||||| || || || |||||||| ||||||||| || || ||||| Sbjct 343312 CCTTCCTTATCTTGAATTTTAGCCTTCACATTTTCTATCGTATCAGAAGCCTCGACTTCT 343253 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||| ||||| || || || || || |||||||| Sbjct 343252 AGGGTGATAGTCTTCCCTGTTAATGTTTTCACGAAAATCTGCAT 343209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981515325044488