Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_024451.1 Length=220222 Score E Sequences producing significant alignments: (Bits) Value seq536 114 2e-20 seq39 96.9 5e-15 seq1206 86.0 9e-12 >seq536 Length=1124010 Score = 114 bits (126), Expect = 2e-20 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 140503 TATCTAATTTTTGTTTAGGAAAACACCTTTCAAGTGAAAACGATCTTTTAAAAGATCAAC 140562 || |||| ||||| || |||||||| ||| ||||||||| || ||| | || ||||||| Sbjct 778157 TAACTAACTTTTGCTTGGGAAAACATCTTGGAAGTGAAAATGACCTTCTGAAGGATCAAC 778216 Query 140563 GCGGGTCTCCCGCATATATTTCTCCGGATGTTATCAGCGGTAAACCATATTTAGGTAA 140620 | || ||||| ||||| ||||| || |||||| || | || ||||||||||||||||| Sbjct 778217 GTGGCTCTCCTGCATACATTTCACCTGATGTTCTCTGTGGAAAACCATATTTAGGTAA 778274 >seq39 Length=3240425 Score = 96.9 bits (106), Expect = 5e-15 Identities = 126/168 (75%), Gaps = 5/168 (3%) Strand=Plus/Plus Query 116850 ATAACttttttgat-ttttCTAA-CACAGTCCAATTTCTGAATTTTTTGCCACCATCTTT 116907 |||| || |||| | |||||||| | || |||| ||||| ||| ||| || ||| || | Sbjct 2060288 ATAAGTTGTTTGCTGTTTTCTAATCGCA-TCCAGTTTCTAAATCGTTTACCGCCA-CTAT 2060345 Query 116908 G-CAAAGTTTGGTGGCATTAAAATATCCCGTCTCCTTATCGACAACCAACTTAAAGTCTC 116966 | || | ||| || ||||||||| |||| ||| |||||| | |||||| ||||| |||| Sbjct 2060346 GACATAATTTAGTAGCATTAAAACATCCAGTCGACTTATCTATAACCAAATTAAAATCTC 2060405 Query 116967 CAAATATCCCATGGTGGAAATTATCCTTGATTTGTTCATAACATATAT 117014 |||| | |||| | | || ||||||||||||||||||| || Sbjct 2060406 CAAAGAGACCATACCAATACTGGTCTTTGATTTGTTCATAACATACAT 2060453 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 61058 CCAATTCGTAAAtttttttCCTCCATAATTGCAGAGTTTGGTTGCATTAAAACAACCTGT 61117 ||| || ||||| ||| || ||| || || | ||| || ||||||||||| || || Sbjct 2060317 CCAGTTTCTAAATCGTTTACCGCCACTATGACATAATTTAGTAGCATTAAAACATCCAGT 2060376 Query 61118 GTTCTTATCAACAACCAACTTAAAGTCTCCAAATAGCCCATAGTAAAAGTTGTCTTTAAT 61177 |||||| | |||||| ||||| |||||||| || ||||| || | | |||||| || Sbjct 2060377 CGACTTATCTATAACCAAATTAAAATCTCCAAAGAGACCATACCAATACTGGTCTTTGAT 2060436 Query 61178 ATGTTCATAACATATAT 61194 ||||||||||||| || Sbjct 2060437 TTGTTCATAACATACAT 2060453 >seq1206 Length=549353 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 61077 CCTCCATAATTGCAGAGTTTGGTTGCATTAAAACAACCTGTGTTCTTATCAACAACCAAC 61136 |||||| ||| || | |||||| |||||||||||||| || |||||| | |||| Sbjct 366503 CCTCCACTATTACATAATTTGGTAGCATTAAAACAACCAGTAGACTTATCTATGACCAGA 366444 Query 61137 TTAAAGTCTCCAAATAGCCCATAGTAAAAGTTGTCTTTAATATGTTCATAACATATATCA 61196 ||||| | |||||| || ||||| || | | ||||| || |||| |||||||| || | Sbjct 366443 TTAAATTTTCCAAAGAGACCATACCAATACTGATCTTTGATTTGTTTATAACATAAATTA 366384 Query 61197 TT 61198 || Sbjct 366383 TT 366382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 704364049914240