Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2315 107 2e-18 seq783 105 6e-18 seq242 86.0 6e-12 >seq2315 Length=138946 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||||||||| ||||||||||| | ||| ||| | |||||||| Sbjct 33198 AAATGCAGAGTAGACTCTTTCTGAATATTGTAATCTGAAAGTGTGCGACCA-TCCTCGAG 33140 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||| || ||||||| | ||||||||| |||||||| || ||||| || || Sbjct 33139 CTGTTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTGAAT 33080 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| || | | ||||| || || | || ||||| || | || | || || || Sbjct 33079 CTTTGCTTTTACATTCTCAATGGTATCTGAAGGTTCCACTTCCAATGTAATTGTCTTTCC 33020 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || || || ||||||||| Sbjct 33019 TGTCAAGGTCTTCACAAAGATCTGCATG 32992 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||| || || ||| |||| | | |||||| || ||||| || || || ||| Sbjct 26932 TCTTCCAGCTGTTTCCCTGCGAAAATCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTG 26873 Query 133566 TCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| |||||||| | | ||||| || || | || ||||| || | ||| | Sbjct 26872 TCT-TGAATTTTTGCTTTTACATTCTCAATGGTATCAGATGGTTCCACCTCAAGGGTTAT 26814 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| || || |||||||| || ||||||||||| Sbjct 26813 GGTTTTACCAGTAAGAGTTTTCACAAAAATCTGCAT 26778 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 |||| ||||| |||||||| || ||| | | | ||||| |||||||| || || | Sbjct 27320 CTTTTTGTATGTTGTAATCAGACAGTGTGCGGCCA-TCCTCCAGCTGCTTACCAGCAAAG 27262 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || | ||||| || ||||| || ||||||||||| |||||| || | | Sbjct 27261 ATAAGTCTTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGTATCTTTGCTTTTACATTT 27202 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| || || | || ||||| || | ||||| ||||| || |||| ||| || ||| Sbjct 27201 TCAATTGTATCAGATGGTTCCACTTCCAAGGTGATAGTTTTTCCAGTCAAAGTCTTAACG 27142 Query 133650 AAAATCTGCAT 133660 || || ||||| Sbjct 27141 AAGATTTGCAT 27131 >seq783 Length=580412 Score = 105 bits (116), Expect = 6e-18 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || || |||||||| || |||||||| | || || || |||||||||||||||| Sbjct 390325 GTAGATTCTTTCTGAATGTTGTAATCTGAAAGAGTTCGGCCG--TCCTCGAGCTGCTTGC 390268 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | | ||| ||||| || || |||||||||||||| ||| ||| ||| Sbjct 390267 CAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCC-TGAATTTTGGCT 390209 Query 133582 T-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | || | ||| | ||| || | | ||| || || | || | ||||| ||||| ||| Sbjct 390208 TTGACATTCTCGATCGTATCCGAAGCCTCGACTTCCAAAGTAATAGTTTTCCCGGTAAGA 390149 Query 133641 GTTTTTACGAAAATCTGCAT 133660 |||||||| ||||||||||| Sbjct 390148 GTTTTTACAAAAATCTGCAT 390129 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| || | || | | ||| ||||| || || |||||||||||| Sbjct 390511 TCCTCTAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTG 390452 Query 133566 TCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||||| |||| | | | || | |||||| | | ||| || || | |||| Sbjct 390451 TCCTGAATCTTG-GCTTTAACGTTTTCGATCGTGTCTGAAGCCTCGACTTCCAAAGTGAT 390393 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| || || || ||||| |||||||||||||| Sbjct 390392 GGTTTTACCAGTAAGGGTTTTCACGAAAATCTGCAT 390357 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || ||||| || || ||||| ||| || || | | | || || ||||||||||| Sbjct 390097 GTAGATTCTTTTTGAATGTTGTAGTCGGACAGGGTTCGTCCA-TCTTCAAGCTGCTTGCC 390039 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | | ||| ||||| || || ||||||||||| || ||||| || Sbjct 390038 GGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTATCCTGAATCTTGGCTTT 389979 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | || ||| || || | |||| ||||||||| || ||||| Sbjct 389978 GACATTTTCGATTGTGTCTGAGGCCTCAACTTCTAGAGTGATGGTTTTGCCAGTAAGAGT 389919 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 389918 CTTCACAAAAATCTGCAT 389901 >seq242 Length=1788442 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| |||||||| || || |||| | | ||| || || |||||||||||||||||| Sbjct 1569931 TCCTCTAGCTGCTTTCCAGCAAAAATCAATCTCTGTTGATCAGGAGGGATGCCTTCCTTG 1569872 Query 133566 TCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| || || | | |||| || || | || || || |||| ||| | Sbjct 1569871 TCTTGGAT-TTTGGCTTTCACATTTTCAATAGTATCAGAGGCTTCAACCTCGAGGGTAAT 1569813 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || | |||||| ||||| |||||||| Sbjct 1569812 TGTTTTACCCGTTAAAGTTTTCACGAATATCTGCAT 1569777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483270987894080