Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_024787.1 Length=132541 Score E Sequences producing significant alignments: (Bits) Value seq2441 104 2e-17 seq1599 89.7 4e-13 >seq2441 Length=2995558 Score = 104 bits (114), Expect = 2e-17 Identities = 258/388 (66%), Gaps = 8/388 (2%) Strand=Plus/Plus Query 29806 ATTAATGTGCCTTAAAATTATAGATTGGTTTGACAATGAAGTCAATAT--CAACCGTATC 29863 |||||| || |||| ||| | || ||||| || || | ||| || || | ||||| Sbjct 370297 ATTAATTGGCTTTAATATTCAATATAGGTTTTAC--TGTATCCAAAATTACAGCGGTATC 370354 Query 29864 TGTAATGTTCTCTAGGATACTCTCTTTCTTTTTATAGGCAAACGGTGCCTCGTCTAGTGT 29923 | |||| || | || | ||| | ||| || || | || | || || ||||| Sbjct 370355 TTTAATAGCTTCCATAATCACATTTTTATCTTTGTATGCCATAGGCGATTCATCCAGTGT 370414 Query 29924 AGACTCCAACACAGAGGAAGACCAAACATCTTTCATTGTATTCTTAAAATCTTCCATTTC 29983 ||| || | || |||| ||| ||| ||| ||| ||| |||| || | ||| || Sbjct 370415 AGATTCGCATACGGAGGTAGAATAAATTCCTTCCATCTCATTTCTAAATTCATTCATATC 370474 Query 29984 TAGTGTTTCTTTA--GCTTTAGAACGAGACAGTACCCTACCTGCCCCATGAGGTGCTGAA 30041 || || ||| | |||| | ||| | ||||| || ||||||||||| || || ||| Sbjct 370475 AAGGGT--CTTAAATGCTTGATTACGTGCCAGTATTCTTCCTGCCCCATGTGGAGCCGAA 370532 Query 30042 TTGTTCCAGTCTTCGTTTCCCTTTCCTGTGGCAATGATGCTACCATCACGCATATTTAGT 30101 ||||||||||| || | |||||| | ||| | |||||| |||||||| | Sbjct 370533 CAGTTCCAGTCTTTATTGCTTTTTCCTTCGCAAATCAACAAACCATCGCGCATATTGAAA 370592 Query 30102 GGGATAACTAGTTGTTTTCCTTTAGAGGCATCTGTCGCACCTTTACGAATAACCTTATTA 30161 ||||||| | | || || ||| | ||| | | |||||||| ||||||| | | | Sbjct 370593 GGGATAATCATCTTTTCACCCTTATAAGCACGTATAGCACCTTTTCGAATAATCCAGTCA 370652 Query 30162 GGAATGTCAATATAATTATGAATAGAGT 30189 | | |||||| ||||||| || |||| Sbjct 370653 CGTGTATCAATAAAATTATGCATCGAGT 370680 >seq1599 Length=3738065 Score = 89.7 bits (98), Expect = 4e-13 Identities = 199/296 (67%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 29859 GTATCTGTAATGTTCTCTAGGATACTCTCTTTCTTTTTATAGGCAAACGGTGCCTCGTCT 29918 |||||| ||||| || | |||| | ||||| | |||||| || | |||| ||||| Sbjct 2561625 GTATCTTTAATGGCTTCAATGATAGTATCTTTATCTTTATAAGCCATTGGTGATTCGTCG 2561684 Query 29919 AGTGTAGACTCCAACACAGAGGAAGACCAAACATCTTTCATTGTATTCTTAAAATCTTCC 29978 ||||||| || | || || | || | | ||||||| || || || || || Sbjct 2561685 AGTGTAGCCTGACAAACGGATGTTGAATATATGCCTTTCATCTCGTTTTTGAATTCGGCC 2561744 Query 29979 ATTTCTAGTGTTTCTTTAGCTTTAGAACGAGACAGTACCCTACCTGCCCCATGAGGTGCT 30038 || || | ||||| ||| || | | | || || | ||||| ||||||||||| Sbjct 2561745 ATATCCAATGTTTTTTTTGCCTGGTTTCTTGCCAATATTCGTCCTGCTCCATGAGGTGCC 2561804 Query 30039 GAATTGTTCCAGTCTTCGTTTCCCTTTCCTGTGGCA-ATGATGCTACCATCACGCATATT 30097 ||| ||||||||| | || | |||||| | ||| || | ||||||| |||||||| Sbjct 2561805 GAACAGTTCCAGTCGGCATTGCTTTTTCCT-TCGCATATCAGAATACCATCGCGCATATT 2561863 Query 30098 TAGTGGGATAACTAGTTGTTTTCCTTTAGAGGCATCTGTCGCACCTTTACGAATAA 30153 | || || || | || | ||||||| |||| | | || ||||| || |||| Sbjct 2561864 GAAGGGTATTACCATTTTCTCTCCTTTATAGGCCCGTATGGCTCCTTTGCGGATAA 2561919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423878285406224