Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2315 118 7e-22 seq783 91.5 1e-13 seq242 89.7 3e-13 seq779 82.4 5e-11 >seq2315 Length=138946 Score = 118 bits (130), Expect = 7e-22 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 ||||||| || ||||| || || |||||||| | || ||||| ||||| || ||||||| Sbjct 28211 CTTTTTGGATATTGTAGTCCGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAA 28152 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 | || |||||||||||| | || | ||||||||||| |||||| || | |||| Sbjct 28151 TTAATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTT-TGCCTTTACATTT 28093 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | ||| || || ||| || || | ||||| ||||| ||||| | || || ||| Sbjct 28092 TCAATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTGCCTGTGAGGGTCTTCACA 28033 Query 33739 AAGATCTGCATA 33750 || ||||||||| Sbjct 28032 AATATCTGCATA 28021 Score = 111 bits (122), Expect = 1e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 ||||| || ||||| || || |||||||| | || ||||| ||||| || |||||||| Sbjct 27707 TTTTGAATATTGTAGTCCGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAATT 27648 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 || |||||||||||| | || | ||||||||||| ||| || || | |||| || Sbjct 27647 AATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATCTT-TGCCTTTACATTTTC 27589 Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | ||| || || ||| || || | ||||| ||||| ||||| | || || ||||| Sbjct 27588 AATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAAA 27529 Query 33741 GATCTGCATA 33750 ||||||||| Sbjct 27528 TATCTGCATA 27519 Score = 109 bits (120), Expect = 4e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 ||||| || ||||| || || |||||||| | || ||||| |||||||| |||||||| Sbjct 29148 TTTTGAATATTGTAGTCCGACAGTGTGCGGCCATCTTCCAACTGTTTTCCTGCAAAAATT 29089 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 || |||||||| ||| | || | ||||||||||| ||| || || | |||| || Sbjct 29088 AATCGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATCTT-TGCCTTTACATTTTC 29030 Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | ||| || || ||| || || | ||||| ||||| ||||| | || || ||||| Sbjct 29029 AATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAAA 28970 Query 33741 GATCTGCAT 33749 |||||||| Sbjct 28969 TATCTGCAT 28961 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | |||||||| ||||| |||||| || || |||||||| || Sbjct 33220 ACCACCTCGCAGACGGAGAACCAAATGCAGAGTAGACTCTTTCTGAATATTGTAATCTGA 33161 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||| || |||||||| | | |||||| ||| | || Sbjct 33160 AAGTGTGCGACCATCCTCGAGCTGTTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGAGG 33101 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || || || ||| || || || |||| ||| ||| || | ||||| Sbjct 33100 GATTCCCTCCTTATCTTGAATCTT-TGCTTTTACATTCTCAATGGTATCTGAAGGTTCCA 33042 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || || ||||| || || || |||||||||||||| Sbjct 33041 CTTCCAATGTAATTGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 32993 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 ||||||||||||||||||| || |||||||| | || |||| || || || ||||| | Sbjct 27320 CTTTTTGTATGTTGTAATCAGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGA 27261 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 | | | |||||||| | || | |||||| ||||| || || || || |||| Sbjct 27260 TAAGTCTTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGTATCTT-TGCTTTTACATTT 27202 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | || || || |||||| || | ||||| ||||| || || || || || || Sbjct 27201 TCAATTGTATCAGATGGTTCCACTTCCAAGGTGATAGTTTTTCCAGTCAAAGTCTTAACG 27142 Query 33739 AAGATCTGCAT 33749 ||||| ||||| Sbjct 27141 AAGATTTGCAT 27131 >seq783 Length=580412 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || |||||| || || || |||||||| || || || || ||| | || || Sbjct 391334 CACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGTCCATCTTC 391275 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | |||||| || ||||| || | ||||||||||||| | || | || || || || Sbjct 391274 AAGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGAATGCCCTCCTTATCCTG 391215 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 |||||| |||| |||| || | ||||| | || || || | ||||| |||| Sbjct 391214 AATTTTGGCTTTC-ACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTT 391156 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || || || || ||||||||| Sbjct 391155 TGCCAGTCAAAGTCTTGACGAAAATCTGCATA 391124 >seq242 Length=1788442 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || || || ||||| |||||||| ||| | || || | || ||||| ||||||| Sbjct 1569966 CTTTCTGAATATTATAATCAGAGAGTGTTCGTCCATCCTCTAGCTGCTTTCCAGCAAAAA 1569907 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 |||| | ||| ||||| | || | ||||| ||||| ||||| |||| |||| Sbjct 1569906 TCAATCTCTGTTGATCAGGAGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTC-ACATTT 1569848 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | || || | ||| || || | || || |||||||| ||||| ||||| || Sbjct 1569847 TCAATAGTATCAGAGGCTTCAACCTCGAGGGTAATTGTTTTACCCGTTAAAGTTTTCACG 1569788 Query 33739 AAGATCTGCAT 33749 || |||||||| Sbjct 1569787 AATATCTGCAT 1569777 >seq779 Length=683570 Score = 82.4 bits (90), Expect = 5e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||||||||| || | ||||| ||| ||||| |||||| || || ||||| || | Sbjct 346027 CACCACCTCTCAAGCGAAGCACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAGTCTG 345968 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | ||||| | || || | || || |||||||| |||| ||| ||||| ||| | | Sbjct 345967 ACAAAGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGTTGCTGGTCTGGGG 345908 Query 33641 GCACACCT 33648 | | |||| Sbjct 345907 GAATACCT 345900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328604681264640