Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_025422.1 Length=155997 Score E Sequences producing significant alignments: (Bits) Value seq2282 93.3 4e-14 >seq2282 Length=143344 Score = 93.3 bits (102), Expect = 4e-14 Identities = 178/260 (68%), Gaps = 7/260 (3%) Strand=Plus/Plus Query 23611 TCCAGTCTCTCCATTGAGCACCATAAACTCGATCAAGATTTCCGTTTTCGTCGGCCCAAG 23670 |||||| | ||| |||| || ||||| || | | ||| || ||||| || ||||| Sbjct 11651 TCCAGTTGCGCCACTGAGAGCCGTAAACAGGACCTAAATTACCATTTTCATCAGCCCATT 11710 Query 23671 AATTCCAGATACCGACTCCATTATCTTGAAGATATTTGATATTTGTATCACCAGAAATCA 23730 ||||||||| | | |||||||||||||| || || ||||||||||| || || | Sbjct 11711 CATTCCAGATTCTACCGCCATTATCTTGAAGGTACTTAATATTTGTATCGCCTTTTATAA 11770 Query 23731 TCCAAAGGAGTTCATGTAGAATCCCTTT--GAACCATACTTTCTTTGATGTCAAAAGAGG 23788 ||| | |||||||| | ||| | ||| || ||| ||| || | ||||| | ||| Sbjct 11771 ACCATAAAAGTTCATGAATAATACTTTTCAGATGCAT--TTTTTTAGTTGTCATTAAAGG 11828 Query 23789 TAATGTATCATTCTCAAGATTGAAACGCATCTGGTAACCGAATTTTGAATACGTCCCGGT 23848 || | | || | || || |||||||| | ||| || ||| || || || Sbjct 11829 GAA---ACCTTTAGATAAATCAAAGCGCATCTGCTGACCAAACACAGAACGTGTGCCTGT 11885 Query 23849 TCCAGTTCTATCCATTCTAT 23868 || |||||||||||| ||| Sbjct 11886 ACCGGTTCTATCCATTTTAT 11905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498907740562240