Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq3436 129 1e-24 seq875 127 5e-24 seq95 98.7 2e-15 seq1535 84.2 5e-11 seq126 84.2 5e-11 >seq3436 Length=2346199 Score = 129 bits (142), Expect = 1e-24 Identities = 213/294 (72%), Gaps = 20/294 (7%) Strand=Plus/Plus Query 299049 GCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATC-GA-CAATTTGCTAAAAGAAC 299106 ||||| ||||| |||||||| | ||||||||||| ||| || | ||| || || || | Sbjct 1623031 GCTGGCACTAAATATCGTGGACAGTTTGAAGAACGTATCAGATCTATT--CTTAATGAGC 1623088 Query 299107 T--AAAGAAACGTGAAAATACTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGC 299164 | ||| |||| || || | || ||| |||||||| || |||| ||| ||||| || Sbjct 1623089 TCCAAAAAAACCCAAATGTAATCTTATTT--ATTGATGAGATACATACTATTGTTGGTGC 1623146 Query 299165 TGGTTCCGCAAGTAATGGTTCTATGGACATG-AGCAAT-ATGCTTAAGCCAGCACTTTCA 299222 |||||| || | || |||||||| || ||||| ||||| || || || ||| | Sbjct 1623147 TGGTTCTGC---TGCCGGATCTATGGA--TGCAGCAAACATGCTGAAACCTGCCCTTGCG 1623201 Query 299223 CGTGGTGAGATTCG-TGTAATTGGTGCAACAACATATGATGAATATCGTAAAAATATCGA 299281 | || || |||| |||| |||| || ||||| |||||||| | ||||||||||| Sbjct 1623202 AGAGGAGAAATTCAATGTA-TTGGAGCTACAACTCTCGATGAATACAGGAAAAATATCGA 1623260 Query 299282 GAAAGATAGTGCATTAACTCGTCGTTTTATGAAAATTGACGTAGTTGAGCCGAC 299335 |||||| ||||||| ||||||||| |||| || |||| |||||||| Sbjct 1623261 AAAAGATGGTGCATTGGAACGTCGTTTTCAGAAAGTT---TTAGTAGAGCCGAC 1623311 >seq875 Length=1099013 Score = 127 bits (140), Expect = 5e-24 Identities = 232/328 (71%), Gaps = 19/328 (6%) Strand=Plus/Minus Query 299079 GAACGCATCGACAATTTGCTAAAAGAACT---AAAGAAACGTGAAAATACTATTGTTTTC 299135 ||||| ||| | | | ||||| ||||| |||||| | |||| ||| | ||| Sbjct 361741 GAACGAATCAAGGCTATTCTAAATGAACTTTCAAAGAACCCG---AATATTATCTTGTTC 361685 Query 299136 ATTGATGAAATTCATATTATGGTTGGGGCTGGTTCCGCAAGTAATGGTTCTATGGACA-T 299194 ||||| || || |||| || ||||| ||||| || || || | ||||||||||| | Sbjct 361684 ATTGACGAGATACATACAATCGTTGGAGCTGGCTCAGC--GTCA-GGTTCTATGGATGCT 361628 Query 299195 GAGCAATATGCTTAAGCCAGCACTTTCACGTGGTGAGATTC-GTGTAATTGGTGCAACAA 299253 | | |||||| | || || ||| | | |||||||| |||| ||||| ||||||| |||| Sbjct 361627 GCG-AATATGTTGAAACCGGCATTAGCTCGTGGTGAAATTCAGTGTA-TTGGTGCTACAA 361570 Query 299254 CATATGATGAATATCGTAAAAATATCGAGAAAGATAGTGCATTAACTCGTCGTTTTATGA 299313 | |||||||| ||||||||||| || |||||| ||||||| |||||||| | Sbjct 361569 CGCTAGATGAATACCGTAAAAATATAGAAAAAGATGGTGCATTGGAACGTCGTTTCCAAA 361510 Query 299314 AAATTGACGTAGTTGAGCCGACAATTGATGA--AACTCGTGCAATTGTTA-ATGGTTTGA 299370 || || | ||||| ||||| | || ||| || | |||| | ||| | | | | Sbjct 361509 AAGTT---ATTGTTGATCCGACTACTGCTGAAGAAACCTTGCAGATATTACAAAATGTAA 361453 Query 299371 AACCAACGTATGAAAAATTCCATAATGT 299398 |||||| ||| ||| || ||||||||| Sbjct 361452 AACCAAGGTACGAAGAACACCATAATGT 361425 >seq95 Length=1800565 Score = 98.7 bits (108), Expect = 2e-15 Identities = 293/440 (67%), Gaps = 24/440 (5%) Strand=Plus/Minus Query 298905 AAAAAGAATGCTATTCTCACT-GGTGAAGCTGGTGTAGGTAAAACACAAATCATCGACGG 298963 ||||| ||| || | || | | ||||| || || || |||||||| || | || || Sbjct 1539276 AAAAATAATCCTCT-CTTAGTAGGTGAGGCAGGCGTTGGTAAAACGGCTATTGTGGAAGG 1539218 Query 298964 GCTTGCACAAGC-TATTGCTGATGGTAACGTACCTGAACACCTGAAAGA---CGTTGAAA 299019 || ||| |||| ||||| |||||| | ||||| |||| | ||||| |||| | Sbjct 1539217 TCTAGCA-AAGCGTATTGTTGATGGGCAAGTACCAGAACTATTAAAAGATAGCGTT---A 1539162 Query 299020 TTCTTTCACTAAATGTTGGTGCATTGACTGCTGGTACTAAGTATCGTGGTGAATTTGAAG 299079 || ||| || || |||| || || || ||||| || || |||||||| ||||| Sbjct 1539161 TTTATTCCCTTGATCTTGGCGCTTTATTGGCAGGTACCAAATACCGTGGTGATTTTGAGA 1539102 Query 299080 AACGCATCGA--CAATTTGCTAAAAGAACTAAAGAAACGTGAAAATACTATTGTTTTCAT 299137 ||||| | | | ||| ||||||| ||||| || ||| ||| | ||| | || || Sbjct 1539101 AACGCTTTAAAGCCGTTT--TAAAAGACCTAAAAAAGCGTACCAATGCGATTTTATTTAT 1539044 Query 299138 TGATGAAATTCATATTATGGTTGGGGCTGGTTCCGCAAGTAAT---GGTTCTATGGA--C 299192 ||||||||| |||| || | || || || ||| | || | ||| ||||||| | Sbjct 1539043 TGATGAAATACATACCATTATCGGTGCAGG---CGCTACTACTGGCGGTGCTATGGATGC 1538987 Query 299193 ATGAGCAATATGCTTAAGCCAGCACTTTCACGTGGTGAGATTCGTGTAATTGGTGCAACA 299252 | | ||| | | || ||||| ||| ||||| | || ||| | || | || Sbjct 1538986 TTCA--AATTTATTAAAACCAGCCCTTAGCAGTGGTCAAATCCGTTGTGTAGGCTCTACC 1538929 Query 299253 ACATATGATGAATATCGTAAAAATATCGAGAAAGATAGTGCATTAACTCGTCGTTTTATG 299312 |||| | | ||||||||| | | | || |||||| || ||| | |||||||| | Sbjct 1538928 ACATTTAAAGAATATCGTGGTATTTTTGATAAAGATCACGCCTTATCGCGTCGTTTCCAG 1538869 Query 299313 AAAATTGACGTAGTTGAGCC 299332 ||| | || || ||||| || Sbjct 1538868 AAAGTGGATGTGGTTGAACC 1538849 >seq1535 Length=1988416 Score = 84.2 bits (92), Expect = 5e-11 Identities = 199/298 (67%), Gaps = 6/298 (2%) Strand=Plus/Minus Query 299048 TGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATTTGCTAAAAGAACT 299107 ||| || || || || ||||| |||||||||| || ||| | | | || || ||| | Sbjct 1373014 TGCCGGAACGAAATACCGTGGGCAATTTGAAGAGCGAATCAAAGCTATCCTTAATGAATT 1372955 Query 299108 AAAGAAACGTGAAAATACTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGCTGG 299167 | ||| | |||| ||| | || |||||||| || |||| | || || || || Sbjct 1372954 ATCGAAGAATCCGAATATTATCTTATTTATTGATGAGATACATACGCTTGTCGGAGCCGG 1372895 Query 299168 TTCCGCAAGTAATGGTTCTATGGACATGAGCAATATGCTTAAGCCAGCACTTTCACGTGG 299227 || || | ||||| ||||| | ||||||| | || || || | || | || Sbjct 1372894 ATCTGC---TTCGGGTTCGATGGATGCGGCCAATATGTTGAAACCTGCGTTGGCAAGAGG 1372838 Query 299228 TGAGATTCGTGTAATTGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGAAAGA 299287 ||| | | || ||||||||||||| ||||| || || |||||||| |||||||| Sbjct 1372837 TGAATTGCAATGCATCGGTGCAACAACATTGGATGAGTACCGGAAAAATATTGAGAAAGA 1372778 Query 299288 TAGTGCATTAACTCGTCGTTTTATGAAAATTGACGTAGTTGAGCCGACAATTGATGAA 299345 | || || ||||||||| ||| ||| | ||||| ||||||| | |||| Sbjct 1372777 CGGAGCTTTGGAACGTCGTTTT-CAAAAGGTGA--TTGTTGATCCGACAACCGCTGAA 1372723 >seq126 Length=3533043 Score = 84.2 bits (92), Expect = 5e-11 Identities = 170/249 (68%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 299049 GCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATTTGCTAAAAGAACTA 299108 || || ||||| || || || ||||||||||||| ||| | | | || || ||||| Sbjct 101693 GCCGGAACTAAATACCGCGGACAATTTGAAGAACGAATCAAAGCTATCCTGAATGAACTT 101634 Query 299109 AAGAAACGTGAAAATACTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGCTGGT 299168 || | |||| |||| | || |||||||||||||||| || || || || ||| Sbjct 101633 TCACAAAATCCGAATATTATTTTGTTTATTGATGAAATTCATACCATTGTCGGAGCAGGT 101574 Query 299169 TCCGCAAGTAATGGTTCTATGGACATGAGCAATATGCTTAAGCCAGCACTTTCACGTGGT 299228 ||| | || |||||||| ||||||| | || || || | || | ||| Sbjct 101573 GGAGCA---ACCGGGTCTATGGATGCTGCCAATATGTTGAAACCTGCTTTGGCAAGAGGT 101517 Query 299229 GAGATTC-GTGTAATTGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGAAAGA 299287 || || | ||| || || ||||| |||| |||||||| || || ||||| || ||||| Sbjct 101516 GAAATACAATGT-ATCGGAGCAACTACATTGGATGAATACCGAAAGAATATAGAAAAAGA 101458 Query 299288 TAGTGCATT 299296 |||| || Sbjct 101457 CGGTGCTTT 101449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1114816968656248