Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_025453.1 Length=40286 Score E Sequences producing significant alignments: (Bits) Value seq1690 104 6e-18 seq1191 98.7 3e-16 seq1615 82.4 2e-11 >seq1690 Length=1574822 Score = 104 bits (114), Expect = 6e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 37009 GGACCATTAGCTCAGTTGGTTAGAGCAAACGGCTCATAACCGTTCGGTCACAGGTTCGAG 37068 |||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| Sbjct 661389 GGACCATTAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTCGGTCCTTGGTTCGAG 661330 Query 37069 TCCTGTATGGTCCAC 37083 |||| ||||||||| Sbjct 661329 TCCTAGATGGTCCAC 661315 >seq1191 Length=1801643 Score = 98.7 bits (108), Expect = 3e-16 Identities = 255/374 (68%), Gaps = 30/374 (8%) Strand=Plus/Minus Query 10429 GAAAAGAA--TACTTGATGCCTGTTGTGGTAGCAGAATGTTTTGGTTTGATAAGCAAAAC 10486 |||||||| ||||||||||||||||||| | ||||||||||||| |||||||||||| Sbjct 1470255 GAAAAGAAAATACTTGATGCCTGTTGTGGCTCCCGAATGTTTTGGTTCGATAAGCAAAAC 1470196 Query 10487 --GAACAAGTTTTGTTTATGGACAACAGAG----AACA-TTACGAAAAATTAGACAGCGG 10539 ||| | || | | || || || ||| |||| ||||| || ||||| | Sbjct 1470195 CCGAATACATTAT--TCATAGATAATAGAAGCGAAACACTTACGGCCAAG--GACAGAGA 1470140 Query 10540 GCATGTTA------TCGATGTTAATCCTAATCTAG-TTGCAGATTTTAGAAATATGCCTT 10592 | | | | || ||| || | | || |||| ||||| | |||| |||| | Sbjct 1470139 TAAAATAAGGACAATAGAAGTTTTACCCGA-CAAGATTGCCGATTTCACAAATTTGCCAT 1470081 Query 10593 TTG--AGGATAATTCGTTTTATCATGTAGTATTTGATCCTCCACATTTATTGAGAGCTGG 10650 ||| || || | || ||| || || || || |||||||||||| | | ||| Sbjct 1470080 TTGCTAGTGAAAGT--TTCTATATGGTTGTTTTCGACCCTCCACATTTAAAGCAACTTGG 1470023 Query 10651 TAGTAACAGC-TGGCTGTCCAAAAAATATGGAAAGCTGAATGAGCAAACTTGGAAAGAAG 10709 || |||| | ||||| | ||||||||||| |||||| ||| |||| || | |||| Sbjct 1470022 -AGAAACATCATGGCTCGCAAAAAAATATGGCAAGCTGCCTGAC--AACT-GGCAGGAAG 1469967 Query 10710 ATATTCAAAAAGGTTTTTCGGAATGTATGAGAGTCTTAAAACCTAACGGGACATTAGTTT 10769 || |||||| ||| ||||||||| | || ||||| || || || | | ||| Sbjct 1469966 TAATAAGAAAAGGATTTGATGAATGTATGCGTGTATTAAAGCCAAATGGAGCTCTTATTT 1469907 Query 10770 TCAAATGGAATGAA 10783 |||||||||| ||| Sbjct 1469906 TCAAATGGAACGAA 1469893 >seq1615 Length=177996 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 37009 GGACCATTAGCTCAGTTGGTTAGAGCAAACGGCTCATAACCGTTCGGTCACAGGTTCGAG 37068 || || |||||||||||||||||||||| ||||||||||||| |||||| |||||||| Sbjct 4924 GGGCCTTTAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTCGGTCCTGGGTTCGAG 4865 Query 37069 TCC 37071 ||| Sbjct 4864 TCC 4862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128755682520192