Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_025462.1 Length=99730 Score E Sequences producing significant alignments: (Bits) Value seq373 107 1e-18 seq179 100 2e-16 seq3099 86.0 4e-12 seq1948 82.4 5e-11 >seq373 Length=1274844 Score = 107 bits (118), Expect = 1e-18 Identities = 189/270 (70%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 19927 GATTAAAACAAACCCAACATCACGAAGATTAATTGTATCAGGTTGGAATCCT-CATGATG 19985 |||||| || || || || || | || ||||| |||| |||||| ||| ||| | | Sbjct 929325 GATTAACACTAATCCTGATTCGCGGCGTTTGATTGTCTCAGCTTGGAACCCTGCATTA-G 929383 Query 19986 TTGCAGATGTAGATTTACCACCTTGCCATACACTATTTCAATTCTTTGTGAAAGATGGTA 20045 | | || | | |||||||||||||| | |||| ||||| | |||| |||||| | Sbjct 929384 TAGATGAAATGGCACTACCACCTTGCCATGCCTTATTCCAATTTTATGTGGCAGATGGAA 929443 Query 20046 AATTATCTTGCCAGTTGTATCAACGAAGTGCTGACTTATTACTTGGTGTTCCATTTAATA 20105 || |||| || ||||| ||||| || ||||| | || ||||||||||| ||||||| Sbjct 929444 AACTATCATGTCAGTTATATCAGCGTTCAGCTGATATTTTCCTTGGTGTTCCCTTTAATA 929503 Query 20106 TTGCATCTTATGCTTTACTTACACACTTAGTTGCATTAGAATGTGGGCTTAATGTT-GGT 20164 |||| |||||| ||| | || | || || || ||| ||| ||| ||| Sbjct 929504 TTGCTAGTTATGCATTATTGACGATGATGGTGGCGCAAGTTTGT-AATTTAGGGTTAGGT 929562 Query 20165 GAGTTTGTTTGGGTTGGTGGTGATTGCCAC 20194 || ||| ||||| ||||||||| ||||| Sbjct 929563 GATTTTATTTGGACGGGTGGTGATAGCCAC 929592 >seq179 Length=2312354 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19919 ATTAATGAGATTAAAACAAACCCAACATCACGAAGATTAATTGTATCAGGTTGGAATCCT 19978 || ||| | || |||| ||| || ||| ||||||| ||||| | |||||| | Sbjct 182441 ATAAATAATATCAAAAAAAATCCTGATTCAAGAAGATTGATTGTTAGTGCATGGAATGTT 182500 Query 19979 CATGATGTTGCAGATGTAGATTTACCACCTTGCCATACACTATTTCAATTCTTTGTGAAA 20038 |||||| | | | | ||| || || ||||| ||| | ||||| || | ||| Sbjct 182501 GCTGATGTGGATAAAATGGCTTTGCCTCCATGCCACACAATTTTTCAGTTTTATGTATCC 182560 Query 20039 GATGGTAAATTATCTTGCCAGTTGTATCAACGAAGTGCTGACTTATTACTTGGTGTTCCA 20098 || || |||||||| ||||| | |||||||||||||| || | || || || || || Sbjct 182561 GACGGAAAATTATCATGCCAACTTTATCAACGAAGTGCCGATCTTTTTCTGGGAGTCCCT 182620 Query 20099 TTTAATATTGCATCTTATGCTTTACTTACA 20128 |||||||||||||| ||||| | |||||| Sbjct 182621 TTTAATATTGCATCATATGCACTCCTTACA 182650 >seq3099 Length=1637421 Score = 86.0 bits (94), Expect = 4e-12 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 20003 CCACCTTGCCATACACTATTTCAATTCTTTGTGAAAGATGGTAAATT-ATCTTGCCAGTT 20061 || ||||||||| || | ||||| || | |||| ||||||||||| | | ||| | | Sbjct 176668 CCTCCTTGCCATGCATTTTTTCAGTTTTATGTGGCCGATGGTAAATTGAGCCTGCAACT- 176610 Query 20062 GTATCAACGAAGTGCTGACTTATTACTTGGTGTTCCATTTAATATTGCATCTTATGCTTT 20121 ||||||| | || || || |||| | |||||||| || |||||||| ||||||||||| Sbjct 176609 GTATCAAAGGAGCGCCGATATATTTTTAGGTGTTCCGTTCAATATTGCTTCTTATGCTTT 176550 Query 20122 A 20122 | Sbjct 176549 A 176549 >seq1948 Length=475166 Score = 82.4 bits (90), Expect = 5e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 19998 ATTTACCACCTTGCCATACACTATTTCAATTCTTTGTGAAAGATGGTAAATTATCTTGCC 20057 ||||||| || || ||| | | || ||||||| |||| | |||| |||| | | Sbjct 215629 ATTTACCTCCATGTCATGCTTTTTTCCAATTCTATGTGGCAAATGGACGATTAAGCTTAC 215688 Query 20058 AGTTGTATCAACGAAGTGCTGACTTATTACTTGGTGTTCCATTTAATATTGCATCTTATG 20117 | || |||||||| |||||||| |||| || || || |||||||| || || || |||| Sbjct 215689 AATTATATCAACGCAGTGCTGATATATTTCTGGGAGTGCCATTTAACATAGCGTCATATG 215748 Query 20118 CTTTACTT 20125 |||||||| Sbjct 215749 CTTTACTT 215756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318914809968392