Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_025462.1
Length=99730
Score E
Sequences producing significant alignments: (Bits) Value
seq373 107 1e-18
seq179 100 2e-16
seq3099 86.0 4e-12
seq1948 82.4 5e-11
>seq373
Length=1274844
Score = 107 bits (118), Expect = 1e-18
Identities = 189/270 (70%), Gaps = 4/270 (1%)
Strand=Plus/Plus
Query 19927 GATTAAAACAAACCCAACATCACGAAGATTAATTGTATCAGGTTGGAATCCT-CATGATG 19985
|||||| || || || || || | || ||||| |||| |||||| ||| ||| | |
Sbjct 929325 GATTAACACTAATCCTGATTCGCGGCGTTTGATTGTCTCAGCTTGGAACCCTGCATTA-G 929383
Query 19986 TTGCAGATGTAGATTTACCACCTTGCCATACACTATTTCAATTCTTTGTGAAAGATGGTA 20045
| | || | | |||||||||||||| | |||| ||||| | |||| |||||| |
Sbjct 929384 TAGATGAAATGGCACTACCACCTTGCCATGCCTTATTCCAATTTTATGTGGCAGATGGAA 929443
Query 20046 AATTATCTTGCCAGTTGTATCAACGAAGTGCTGACTTATTACTTGGTGTTCCATTTAATA 20105
|| |||| || ||||| ||||| || ||||| | || ||||||||||| |||||||
Sbjct 929444 AACTATCATGTCAGTTATATCAGCGTTCAGCTGATATTTTCCTTGGTGTTCCCTTTAATA 929503
Query 20106 TTGCATCTTATGCTTTACTTACACACTTAGTTGCATTAGAATGTGGGCTTAATGTT-GGT 20164
|||| |||||| ||| | || | || || || ||| ||| ||| |||
Sbjct 929504 TTGCTAGTTATGCATTATTGACGATGATGGTGGCGCAAGTTTGT-AATTTAGGGTTAGGT 929562
Query 20165 GAGTTTGTTTGGGTTGGTGGTGATTGCCAC 20194
|| ||| ||||| ||||||||| |||||
Sbjct 929563 GATTTTATTTGGACGGGTGGTGATAGCCAC 929592
>seq179
Length=2312354
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 19919 ATTAATGAGATTAAAACAAACCCAACATCACGAAGATTAATTGTATCAGGTTGGAATCCT 19978
|| ||| | || |||| ||| || ||| ||||||| ||||| | |||||| |
Sbjct 182441 ATAAATAATATCAAAAAAAATCCTGATTCAAGAAGATTGATTGTTAGTGCATGGAATGTT 182500
Query 19979 CATGATGTTGCAGATGTAGATTTACCACCTTGCCATACACTATTTCAATTCTTTGTGAAA 20038
|||||| | | | | ||| || || ||||| ||| | ||||| || | |||
Sbjct 182501 GCTGATGTGGATAAAATGGCTTTGCCTCCATGCCACACAATTTTTCAGTTTTATGTATCC 182560
Query 20039 GATGGTAAATTATCTTGCCAGTTGTATCAACGAAGTGCTGACTTATTACTTGGTGTTCCA 20098
|| || |||||||| ||||| | |||||||||||||| || | || || || || ||
Sbjct 182561 GACGGAAAATTATCATGCCAACTTTATCAACGAAGTGCCGATCTTTTTCTGGGAGTCCCT 182620
Query 20099 TTTAATATTGCATCTTATGCTTTACTTACA 20128
|||||||||||||| ||||| | ||||||
Sbjct 182621 TTTAATATTGCATCATATGCACTCCTTACA 182650
>seq3099
Length=1637421
Score = 86.0 bits (94), Expect = 4e-12
Identities = 93/121 (77%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 20003 CCACCTTGCCATACACTATTTCAATTCTTTGTGAAAGATGGTAAATT-ATCTTGCCAGTT 20061
|| ||||||||| || | ||||| || | |||| ||||||||||| | | ||| | |
Sbjct 176668 CCTCCTTGCCATGCATTTTTTCAGTTTTATGTGGCCGATGGTAAATTGAGCCTGCAACT- 176610
Query 20062 GTATCAACGAAGTGCTGACTTATTACTTGGTGTTCCATTTAATATTGCATCTTATGCTTT 20121
||||||| | || || || |||| | |||||||| || |||||||| |||||||||||
Sbjct 176609 GTATCAAAGGAGCGCCGATATATTTTTAGGTGTTCCGTTCAATATTGCTTCTTATGCTTT 176550
Query 20122 A 20122
|
Sbjct 176549 A 176549
>seq1948
Length=475166
Score = 82.4 bits (90), Expect = 5e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 19998 ATTTACCACCTTGCCATACACTATTTCAATTCTTTGTGAAAGATGGTAAATTATCTTGCC 20057
||||||| || || ||| | | || ||||||| |||| | |||| |||| | |
Sbjct 215629 ATTTACCTCCATGTCATGCTTTTTTCCAATTCTATGTGGCAAATGGACGATTAAGCTTAC 215688
Query 20058 AGTTGTATCAACGAAGTGCTGACTTATTACTTGGTGTTCCATTTAATATTGCATCTTATG 20117
| || |||||||| |||||||| |||| || || || |||||||| || || || ||||
Sbjct 215689 AATTATATCAACGCAGTGCTGATATATTTCTGGGAGTGCCATTTAACATAGCGTCATATG 215748
Query 20118 CTTTACTT 20125
||||||||
Sbjct 215749 CTTTACTT 215756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318914809968392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |