Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2315 109 5e-19 seq783 84.2 2e-11 >seq2315 Length=138946 Score = 109 bits (120), Expect = 5e-19 Identities = 171/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || || || || ||||| | || || | ||||| ||| | Sbjct 32992 CATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACAATTACATTGGAAGTGGAACCTTC 33051 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | |||||| ||| ||| ||||| ||||| || || || || || Sbjct 33052 AGATACCATTGAGAATGTAAAAGCAAAGATTCAAGATAAGGAGGGAATCCCTCCAGACCA 33111 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| |||||||||| | |||||||| ||||| |||| | | | | |||| ||||| Sbjct 33112 GCAGAGACTCATTTTTGCTGGCAAACAGCTCGAGGATGGTCGCACACTTTCAG--ATTAC 33169 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAATGATCA 25411 |||||||| ||||| || || | ||||| || | | || |||| || | ||| || Sbjct 33170 AATATTCAGAAAGAGTCTACTCTGCATTTGGTTCTCCGTCTGCGAGGTGGTTATTGAACA 33229 Query 25412 TTC 25414 ||| Sbjct 33230 TTC 33232 >seq783 Length=580412 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | || || ||| | ||||| | ||||| || ||| Sbjct 389901 ATGCAGATTTTTGTGAAGACTCTTACTGGCAAAACCATCACTCTAGAAGTTGAGGCCTCA 389960 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| || ||| ||||| || || || || || || || Sbjct 389961 GACACAATCGAAAATGTCAAAGCCAAGATTCAGGATAAGGAAGGCATTCCCCCAGACCAA 390020 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || ||| | || | | |||||| || || ||||||| ||| |||| ||| |||| Sbjct 390021 CAGAGATTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTGTC--CGACTACA 390078 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 | |||||||||||||| || ||||| | ||||| Sbjct 390079 ACATTCAAAAAGAATCTACACTTCATCTTGTGTT 390112 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||||||||| | ||||| ||| | || || | |||||||| || Sbjct 390129 ATGCAGATTTTTGTAAAAACTCTTACCGGGAAAACTATTACTTTGGAAGTCGAGGCTTCG 390188 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| |||||| | || ||| |||||| || || || || || || || || || Sbjct 390189 GATACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGACCAA 390248 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | | ||||| || ||||| || | ||| | | |||||||| Sbjct 390249 CAGAGATTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCAGATTACAAC 390308 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||||| |||||||| || | ||| | ||| | ||| Sbjct 390309 ATTCAGAAAGAATCTACACTCCATCTTGTGCTGAGA 390344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444956465245440