Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq783 120 3e-22 seq242 111 1e-19 seq2315 95.1 1e-14 >seq783 Length=580412 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | |||||| | ||| | ||| || |||||||||||||| |||| Sbjct 390129 TTCCACCACGAAGTCGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 390070 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || |||||| | || || |||||||| || ||||| ||||| | ||| ||||| | | Sbjct 390069 ACAGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGG 390010 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| || ||||| ||| ||||| || | | || | | ||||| | || | Sbjct 390009 GAATGCCTTCCTTATCCTGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAA 389950 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | || | ||||| ||||| || || | ||| |||||||| |||||||||| Sbjct 389949 CTTCTAGAGTGATGGTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCATTC 389899 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||| ||| | ||| | ||| || || |||||||||||||| | Sbjct 390355 CCACCACGAAGTCTCAGCACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATCTGAA 390296 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| |||| || |||||||| || ||||| ||||| | ||| ||||| | ||| Sbjct 390295 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 390236 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || ||||||||| ||| ||| || || | | | | | ||| || | || || Sbjct 390235 ATGCCTTCCTTGTCC-TGAATTTTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGAC 390177 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||| || || ||||| || || | |||||| ||||| |||||||||| Sbjct 390176 TTCCAAAGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAAATCTGCATTC 390127 Score = 109 bits (120), Expect = 5e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| || | || |||||| | || || || || ||||| ||||| Sbjct 391315 TCCTTCTGAATGTTGTAGTCAGACAGGGTTCGTCCATCTTCAAGTTGTTTACCAGCAAAG 391256 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 || | |||||||| || | ||||| || |||||| ||| ||| ||| || |||| | | Sbjct 391255 ATAAGACGCTGCTGATCTGGAGGAATGCCCTCCTTATCC-TGAATTTTGGCTTTCACATT 391197 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | || || |||| ||||| ||||| || |||||||| || || Sbjct 391196 TTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTTTGCCAGTCAAAGTCTTGAC 391137 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 391136 GAAAATCTGCAT 391125 >seq242 Length=1788442 Score = 111 bits (122), Expect = 1e-19 Identities = 148/202 (73%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 35541 TACTCTCCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 ||||| ||||| ||||| || ||||| | | ||||| | || || |||||||| || Sbjct 1569973 TACTCACCTTTCTGAATATTATAATCAGAGAGTGTTCGTCCATCCTCTAGCTGCTTTCCA 1569914 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT- 35658 ||||| ||||| | ||| || || | ||| | || |||||||| ||| ||| |||| Sbjct 1569913 GCAAAAATCAATCTCTGTTGATCAGGAGGGATGCCTTCCTTGTCTTGGAT-TTTGGCTTT 1569855 Query 35659 CAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 || | || | | || || | ||| ||||| | || || ||||||||||| ||||| Sbjct 1569854 CACATTTTCAATAGTATCAGAGGCTTCAACCTCGAGGGTAATTGTTTTACCCGTTAAAGT 1569795 Query 35719 TTTCACAAATATCTGCATTCTG 35740 |||||| |||||||||||| || Sbjct 1569794 TTTCACGAATATCTGCATTATG 1569773 >seq2315 Length=138946 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 ||||| ||||||||||| | || || || | || |||||||||||||| ||||| || Sbjct 27318 TTTTGTATGTTGTAATCAGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATA 27259 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC 35668 | | ||||| || | ||||| | |||||||| |||||| || | | || | Sbjct 27258 AGTCTTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGTATCTTTGCTTTTACATTTTCA 27199 Query 35669 ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728 | || || | |||||| |||| ||||| ||||| || |||||||| || || || Sbjct 27198 ATTGTATCAGATGGTTCCACTTCCAAGGTGATAGTTTTTCCAGTCAAAGTCTTAACGAAG 27139 Query 35729 ATCTGCATTC 35738 || ||||||| Sbjct 27138 ATTTGCATTC 27129 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 ||||||||||| || || | | || || | || |||||||| || || || || ||| Sbjct 26965 TTTTGAATGTTATAGTCTGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAAAATC 26906 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGTTGC 35667 || | |||||| || | ||||| | ||| ||||| ||| |||||||| | | | | Sbjct 26905 AATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCT-TGAATTTTTGCTTTTACATTCTC 26847 Query 35668 CACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAA 35727 | || || | ||||||||| | || || |||||||| || | |||||||||||| Sbjct 26846 AATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCACAAA 26787 Query 35728 TATCTGCATTCTG 35740 |||||||| ||| Sbjct 26786 AATCTGCATCCTG 26774 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||||||||| ||||| || | || || || | || |||| ||| || || ||||| | Sbjct 29150 CCTTTTGAATATTGTAGTCCGACAGTGTGCGGCCATCTTCCAACTGTTTTCCTGCAAAAA 29091 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 | || ||||||||||| | || | | || ||||| |||||| ||| | | || Sbjct 29090 TTAATCGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTTT 29031 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | || || | ||| ||||||| ||||| ||||| || || | || ||||||| Sbjct 29030 CAATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAA 28971 Query 35727 ATATCTGCAT 35736 |||||||||| Sbjct 28970 ATATCTGCAT 28961 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||||||||| ||||| || | || || || | || |||| ||| || || ||||| | Sbjct 27709 CCTTTTGAATATTGTAGTCCGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAA 27650 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 | || |||||||| || | || | | || ||||| |||||| ||| | | || Sbjct 27649 TTAATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTTT 27590 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | || || | ||| ||||||| ||||| ||||| || || | || ||||||| Sbjct 27589 CAATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAA 27530 Query 35727 ATATCTGCAT 35736 |||||||||| Sbjct 27529 ATATCTGCAT 27520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450653899063360