Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq714 140 4e-28
seq211 105 9e-18
>seq714
Length=734366
Score = 140 bits (154), Expect = 4e-28
Identities = 167/226 (74%), Gaps = 3/226 (1%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
||||||| || ||| |||||||| || || | ||| ||||| || || | || |
Sbjct 43902 CCTCATCCCTTGAAATCAATTCGTTGCTGAAAGTCAATCCTGGCATAAGTCCTCTTTTCT 43961
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||| || || | |||||| || || ||||| || || || ||||| |||||||
Sbjct 43962 TCAGCCAGAAAATTGAAGCAAAGCTCCCGGAGAAGAAAATACCCTCCACTGCAGCAAATG 44021
Query 39759 CAACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTTCTGTGCCCAATCAG 39815
| || | |||||| || || ||| ||||||| ||||||| | |||||||| |
Sbjct 44022 CTACCACTCTCTCGCCATATGTTGCAGTATCATTTGCAATCCACTGAAGGGCCCAATCTG 44081
Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861
||||||| |||||||| ||||||||||| ||||||||||| | |||
Sbjct 44082 CTTTCTTTTTTACACACGGCATTGTTTCAATAGCATTAAATAAATA 44127
Score = 140 bits (154), Expect = 4e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
|||| ||| |||||||||||| | ||||| |||||||||||||| | ||||| || ||
Sbjct 47749 ATCTCTAATATATGTATCTATAAGTAGACTGTACATTTCTGAATGAACATTTTCCATTGC 47808
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996
|| ||||| || || |||||||||||||| || | |||||| ||| | ||||||||
Sbjct 47809 AATTTGAAAGCCATAGAAACATCTTGCTTCTGTGACTTGTACTTCTTGGCTGAATCTTTC 47868
Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056
| | |||||||| || |||||||| || ||||| ||||| | ||| ||| ||
Sbjct 47869 TACAAGGTTTTCATTTACAATTCCATCTGATGCTGCAAAGAATGCAAGTACGTGTGATAT 47928
Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGT 40091
|||| ||||||| ||| | ||| | |||||
Sbjct 47929 GAAATGCCTTTCATCATTTGTAAGTTTTTCCCAGT 47963
Score = 107 bits (118), Expect = 3e-18
Identities = 88/107 (82%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162
||||||| |||||||||||| |||||||| || || || || || ||||||||||| | |
Sbjct 55186 TTTGATAAATCTACTTCTTCTGCTGTCCAGAATGAGGCTTCAGCTTTTTTGTACATTTGC 55245
Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209
|| ||||| |||| || || |||||||| |||||||| |||||||
Sbjct 55246 CAAATATCTTGATACTGAATAGGAAAAATCACAAATCTTCTTGGATT 55292
Score = 89.7 bits (98), Expect = 7e-13
Identities = 103/138 (75%), Gaps = 3/138 (2%)
Strand=Plus/Plus
Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTTT 39327
|||||| ||| |||| || | ||| ||| ||||||| | ||| || || |||
Sbjct 38268 TTAAAAATCAGCATCCAATGTGAAAACATTTTCTTCTTTCTTAGCCATCACACCACATTT 38327
Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387
|| || || ||||| |||||||| ||||| || ||||||||||||||||| | |||
Sbjct 38328 CTGATACTCTCCAACTTTCTTCTCGAAGAAATTCGTCTTGCCTTCCAATGATATGTGTTC 38387
Query 39388 CATGAAATCAAACGGATT 39405
|||||| || ||||||||
Sbjct 38388 CATGAAGTCGAACGGATT 38405
>seq211
Length=1809889
Score = 105 bits (116), Expect = 9e-18
Identities = 126/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390
|| |||| || |||||| ||||| || || | ||| || || || ||||| ||||| |
Sbjct 905023 CACCACTGAAGGTTTTTTTAGTTTCTTTATGAAGATTGGAAATAGCAATTCTAGCTGCAA 904964
Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450
|||||||||| || ||||| | ||| || ||||| ||| |||| ||||||| |||
Sbjct 904963 GAATAGCATAATCTGGATGCTTTGTTGTCATCGTAGCAGCTGTTTCAGCAGCTAGATTAT 904904
Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
| ||||| | |||||| ||||| |||||| || | ||||||||||
Sbjct 904903 CCAATTCAACAGTTGTTACTCCAGCATATAGGCCGCTGACCACTTTCATGG 904853
Score = 100 bits (110), Expect = 4e-16
Identities = 130/177 (73%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606
|||||||| | | ||||||||||| ||||| |||| |||||| |||| |||
Sbjct 909900 CCAGGACAAGCGTGTGGACACATCAGGCTCCACATTTCATTGAGCTTAACACGTTCCATG 909841
Query 69607 AATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCC 69665
|| ||||| |||||||| || || ||| || | ||||||| |||| ||||||| || ||
Sbjct 909840 AAAAGATCAGGAATCCAGAGCGC-ATAGAACATGTCTCTGGCTCTAATTTCTTCTTTGCC 909782
Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 69722
|| ||||| || | || || || || | | |||| |||||||||||| | |||
Sbjct 909781 AGTGTTTTTCTTCAAGTCAAGGAATTCAAACACGTCAGCATGCCATGGTTCCAAATA 909725
Score = 96.9 bits (106), Expect = 5e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014
|||||| ||||| ||||| | |||||| | |||||| |||||||| | || || ||
Sbjct 919237 ATATGTCTCATAGGGTCCCAATTTTTCAGCCAATTCACAGCTTGCCTCAAGAGCTCCATA 919178
Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074
|| || ||||| || |||| ||| || || || ||||| |||||| || ||| |
Sbjct 919177 GTAGATAGTTTCAAATATCTGCTTGTTTAGCAACTGAGCTTCCTCACTATCAAAAGGAAA 919118
Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTC 69127
| || || |||||||||||||| ||||| | ||||| || |||||||
Sbjct 919117 CCTCATCAGTATGAATGCATCTGCCAAGCCCTGGATTCCAATGCCAATAGGTC 919065
Score = 91.5 bits (100), Expect = 2e-13
Identities = 130/182 (71%), Gaps = 1/182 (1%)
Strand=Plus/Minus
Query 68440 CTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATA 68499
||||| | ||||| |||||| || | ||| ||| | || || |||||||||||
Sbjct 926033 CTCCAAGCATAGAAGTGCATAGACGTCAATTTTCCATAGTTAGGCTCTGCTATATGAATG 925974
Query 68500 TTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTC 68559
|||| |||||||| ||||| || || || |||| ||| || ||||| || | ||||
Sbjct 925973 TTCAGAGATTGACTCTGATCAATAAATGCACCTCGATCAGCTGCCATCTTAACAATAACT 925914
Query 68560 TTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA-GGCTCGT 68618
||||| | || ||||| | ||||||| | | | ||| | || | ||||| |||| ||
Sbjct 925913 TTTTGTGAGATCTCCCACACAGTCTTATATAAATCTTTTAGGTCCTGTGGAATGGCTTGT 925854
Query 68619 AT 68620
||
Sbjct 925853 AT 925852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686695926962880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |