Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq714 140 4e-28 seq211 105 9e-18 >seq714 Length=734366 Score = 140 bits (154), Expect = 4e-28 Identities = 167/226 (74%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||| |||||||| || || | ||| ||||| || || | || | Sbjct 43902 CCTCATCCCTTGAAATCAATTCGTTGCTGAAAGTCAATCCTGGCATAAGTCCTCTTTTCT 43961 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || || | |||||| || || ||||| || || || ||||| ||||||| Sbjct 43962 TCAGCCAGAAAATTGAAGCAAAGCTCCCGGAGAAGAAAATACCCTCCACTGCAGCAAATG 44021 Query 39759 CAACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 | || | |||||| || || ||| ||||||| ||||||| | |||||||| | Sbjct 44022 CTACCACTCTCTCGCCATATGTTGCAGTATCATTTGCAATCCACTGAAGGGCCCAATCTG 44081 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 ||||||| |||||||| ||||||||||| ||||||||||| | ||| Sbjct 44082 CTTTCTTTTTTACACACGGCATTGTTTCAATAGCATTAAATAAATA 44127 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||| ||| |||||||||||| | ||||| |||||||||||||| | ||||| || || Sbjct 47749 ATCTCTAATATATGTATCTATAAGTAGACTGTACATTTCTGAATGAACATTTTCCATTGC 47808 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 || ||||| || || |||||||||||||| || | |||||| ||| | |||||||| Sbjct 47809 AATTTGAAAGCCATAGAAACATCTTGCTTCTGTGACTTGTACTTCTTGGCTGAATCTTTC 47868 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 | | |||||||| || |||||||| || ||||| ||||| | ||| ||| || Sbjct 47869 TACAAGGTTTTCATTTACAATTCCATCTGATGCTGCAAAGAATGCAAGTACGTGTGATAT 47928 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGT 40091 |||| ||||||| ||| | ||| | ||||| Sbjct 47929 GAAATGCCTTTCATCATTTGTAAGTTTTTCCCAGT 47963 Score = 107 bits (118), Expect = 3e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 ||||||| |||||||||||| |||||||| || || || || || ||||||||||| | | Sbjct 55186 TTTGATAAATCTACTTCTTCTGCTGTCCAGAATGAGGCTTCAGCTTTTTTGTACATTTGC 55245 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 || ||||| |||| || || |||||||| |||||||| ||||||| Sbjct 55246 CAAATATCTTGATACTGAATAGGAAAAATCACAAATCTTCTTGGATT 55292 Score = 89.7 bits (98), Expect = 7e-13 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTTT 39327 |||||| ||| |||| || | ||| ||| ||||||| | ||| || || ||| Sbjct 38268 TTAAAAATCAGCATCCAATGTGAAAACATTTTCTTCTTTCTTAGCCATCACACCACATTT 38327 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 || || || ||||| |||||||| ||||| || ||||||||||||||||| | ||| Sbjct 38328 CTGATACTCTCCAACTTTCTTCTCGAAGAAATTCGTCTTGCCTTCCAATGATATGTGTTC 38387 Query 39388 CATGAAATCAAACGGATT 39405 |||||| || |||||||| Sbjct 38388 CATGAAGTCGAACGGATT 38405 >seq211 Length=1809889 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || |||||| ||||| || || | ||| || || || ||||| ||||| | Sbjct 905023 CACCACTGAAGGTTTTTTTAGTTTCTTTATGAAGATTGGAAATAGCAATTCTAGCTGCAA 904964 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 |||||||||| || ||||| | ||| || ||||| ||| |||| ||||||| ||| Sbjct 904963 GAATAGCATAATCTGGATGCTTTGTTGTCATCGTAGCAGCTGTTTCAGCAGCTAGATTAT 904904 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 | ||||| | |||||| ||||| |||||| || | |||||||||| Sbjct 904903 CCAATTCAACAGTTGTTACTCCAGCATATAGGCCGCTGACCACTTTCATGG 904853 Score = 100 bits (110), Expect = 4e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 |||||||| | | ||||||||||| ||||| |||| |||||| |||| ||| Sbjct 909900 CCAGGACAAGCGTGTGGACACATCAGGCTCCACATTTCATTGAGCTTAACACGTTCCATG 909841 Query 69607 AATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCC 69665 || ||||| |||||||| || || ||| || | ||||||| |||| ||||||| || || Sbjct 909840 AAAAGATCAGGAATCCAGAGCGC-ATAGAACATGTCTCTGGCTCTAATTTCTTCTTTGCC 909782 Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 69722 || ||||| || | || || || || | | |||| |||||||||||| | ||| Sbjct 909781 AGTGTTTTTCTTCAAGTCAAGGAATTCAAACACGTCAGCATGCCATGGTTCCAAATA 909725 Score = 96.9 bits (106), Expect = 5e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 |||||| ||||| ||||| | |||||| | |||||| |||||||| | || || || Sbjct 919237 ATATGTCTCATAGGGTCCCAATTTTTCAGCCAATTCACAGCTTGCCTCAAGAGCTCCATA 919178 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 || || ||||| || |||| ||| || || || ||||| |||||| || ||| | Sbjct 919177 GTAGATAGTTTCAAATATCTGCTTGTTTAGCAACTGAGCTTCCTCACTATCAAAAGGAAA 919118 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTC 69127 | || || |||||||||||||| ||||| | ||||| || ||||||| Sbjct 919117 CCTCATCAGTATGAATGCATCTGCCAAGCCCTGGATTCCAATGCCAATAGGTC 919065 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/182 (71%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 68440 CTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATA 68499 ||||| | ||||| |||||| || | ||| ||| | || || ||||||||||| Sbjct 926033 CTCCAAGCATAGAAGTGCATAGACGTCAATTTTCCATAGTTAGGCTCTGCTATATGAATG 925974 Query 68500 TTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTC 68559 |||| |||||||| ||||| || || || |||| ||| || ||||| || | |||| Sbjct 925973 TTCAGAGATTGACTCTGATCAATAAATGCACCTCGATCAGCTGCCATCTTAACAATAACT 925914 Query 68560 TTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA-GGCTCGT 68618 ||||| | || ||||| | ||||||| | | | ||| | || | ||||| |||| || Sbjct 925913 TTTTGTGAGATCTCCCACACAGTCTTATATAAATCTTTTAGGTCCTGTGGAATGGCTTGT 925854 Query 68619 AT 68620 || Sbjct 925853 AT 925852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686695926962880