Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq3436 129 1e-24 seq875 127 5e-24 seq95 98.7 2e-15 seq1535 84.2 5e-11 seq126 84.2 5e-11 >seq3436 Length=2346199 Score = 129 bits (142), Expect = 1e-24 Identities = 213/294 (72%), Gaps = 20/294 (7%) Strand=Plus/Minus Query 331998 GTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTCTCGATA 332057 |||||||| |||| || |||| ||||||||| ||||||| |||||| |||||| Sbjct 1623311 GTCGGCTCTACTAA---AACTTTCTGAAAACGACGTTCCAATGCACCATCTTTTTCGATA 1623255 Query 332058 TTTTTACGATATTCATCATATGTTGTTGCACCAATTACA-CGAATCTCACCACGTGAAAG 332116 ||||| | |||||||| ||||| || |||| |||| |||| || || | | ||| Sbjct 1623254 TTTTTCCTGTATTCATCGAGAGTTGTAGCTCCAA-TACATTGAATTTCTCCTCTCGCAAG 1623196 Query 332117 TGCTGGCTTAAGCAT-ATTGCT-CATGTCCATAGAACCATTACTTGCGGAACCAGCCCCA 332174 || || || ||||| ||||| || |||||||| || | || |||||||| ||| Sbjct 1623195 GGCAGGTTTCAGCATGTTTGCTGCA--TCCATAGATCCGGCA---GCAGAACCAGCACCA 1623141 Query 332175 ACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTT--AGTTCTT 332232 || ||| |||| || |||||||| ||| || | || || |||| ||| || || | Sbjct 1623140 ACAATAGTATGTATCTCATCAAT--AAATAAGATTACATTTGGGTTTTTTTGGAGCTCAT 1623083 Query 332233 TTAGCAAATTG-TC-GATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGC 332284 | || ||| | || ||| ||||||||||| | |||||||| ||||| ||||| Sbjct 1623082 TAAG--AATAGATCTGATACGTTCTTCAAACTGTCCACGATATTTAGTGCCAGC 1623031 >seq875 Length=1099013 Score = 127 bits (140), Expect = 5e-24 Identities = 232/328 (71%), Gaps = 19/328 (6%) Strand=Plus/Plus Query 331935 ACATTATGGAATTTTTCATACGTTGGTTTCAAACCAT-TAACAATTGCACGAGTT--TCA 331991 ||||||||| || ||| ||| ||||||| | | | ||| | |||| | || ||| Sbjct 361425 ACATTATGGTGTTCTTCGTACCTTGGTTTTACATTTTGTAATATCTGCAAGGTTTCTTCA 361484 Query 331992 TCAATTGTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTC 332051 || | ||||| ||||| | || ||| |||||||| ||||||| |||||| Sbjct 361485 GCAGTAGTCGGATCAACAAT---AACTTTTTGGAAACGACGTTCCAATGCACCATCTTTT 361541 Query 332052 TCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACAC-GAATCTCACCACG 332110 || ||||||||||| |||||||| ||||| ||||||| ||||| |||| |||||||| Sbjct 361542 TCTATATTTTTACGGTATTCATCTAGCGTTGTAGCACCAA-TACACTGAATTTCACCACG 361600 Query 332111 TGAAAGTGCTGGCTTAAGCATATTGCTCA-TGTCCATAGAACCATTACTTGCGGAACCAG 332169 | | ||| || || | |||||| | || ||||||||||| | || || || |||| Sbjct 361601 AGCTAATGCCGGTTTCAACATATT-CGCAGCATCCATAGAACC-TGAC--GCTGAGCCAG 361656 Query 332170 CCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTT---A 332226 | ||||| || |||| || || |||||||| | ||| |||| | |||||| | Sbjct 361657 CTCCAACGATTGTATGTATCTCGTCAATGAACAAGATAATATT---CGGGTTCTTTGAAA 361713 Query 332227 GTTCTTTTAGCAAATTGTCGATGCGTTC 332254 |||| ||||| | | | ||| ||||| Sbjct 361714 GTTCATTTAGAATAGCCTTGATTCGTTC 361741 >seq95 Length=1800565 Score = 98.7 bits (108), Expect = 2e-15 Identities = 293/440 (67%), Gaps = 24/440 (5%) Strand=Plus/Plus Query 332001 GGCTCAACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTCTCGATATTT 332060 || ||||| || || | |||| |||||||| | ||| || |||||| || | | | Sbjct 1538849 GGTTCAACCACATCCACTTTCTGGAAACGACGCGATAAGGCGTGATCTTTATCAAAAATA 1538908 Query 332061 TTACGATATTCATCATATGTTGTTGCACCAATTACACGAATCTCACCACGTGAAAGTGCT 332120 ||||||||| | | |||| || | || | ||| || | ||||| ||| ||| Sbjct 1538909 CCACGATATTCTTTAAATGTGGTAGAGCCTACACAACGGATTTGACCACTGCTAAGGGCT 1538968 Query 332121 GGCTTAAGCATATTGCTCATG--TCCATAGAACC---ATTACTTGCGGAACCAGCCCCAA 332175 || || | | ||| | | | ||||||| ||| | || | ||| || || || | Sbjct 1538969 GGTTTTAATAAATT--TGAAGCATCCATAGCACCGCCAGTAGTAGCG---CCTGCACCGA 1539023 Query 332176 CCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTTAGTTCTTTTA 332235 || |||| ||||||||||| || | ||| | ||| ||| || ||||| ||||||| Sbjct 1539024 TAATGGTATGTATTTCATCAATAAATAAAATCGCATTGGTACGCTTTTTTAGGTCTTTTA 1539083 Query 332236 GCAAATTG--TCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCAGTCAATGC 332293 ||| | | | ||||| ||||| |||||||| || || ||||| || || || Sbjct 1539084 --AAACGGCTTTAAAGCGTTTCTCAAAATCACCACGGTATTTGGTACCTGCCAATAAAGC 1539141 Query 332294 ACCAACATTTAGTGAAAGAATTTCAACG---TCTTTCAGGTGTTCAGGTACGTTACCATC 332350 |||| || || ||| ||| |||| ||||| | |||| ||||| | ||||| Sbjct 1539142 GCCAAGATCAAGGGAATAAAT---AACGCTATCTTTTAATAGTTCTGGTACTTGCCCATC 1539198 Query 332351 AGCAATA-GCTTGTGCAAGCCCGTCGATGATTTGTGTTTTACCTACACCAGCTTCACC-A 332408 | ||||| |||| ||| || || || | || |||||||| || || || ||||| | Sbjct 1539199 AACAATACGCTT-TGCTAGACCTTCCACAATAGCCGTTTTACCAACGCCTGCCTCACCTA 1539257 Query 332409 GTGAGAATAGCATTCTTTTT 332428 | || | || ||| ||||| Sbjct 1539258 CTAAG-AGAGGATTATTTTT 1539276 >seq1535 Length=1988416 Score = 84.2 bits (92), Expect = 5e-11 Identities = 199/298 (67%), Gaps = 6/298 (2%) Strand=Plus/Plus Query 331988 TTCATCAATTGTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATC 332047 |||| | ||||||| ||||| | ||| ||| ||||||||| || || | || Sbjct 1372723 TTCAGCGGTTGTCGGATCAACAA--TCACCTTTTG-AAAACGACGTTCCAAAGCTCCGTC 1372779 Query 332048 TTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACACGAATCTCACC 332107 |||||| |||||||| || || ||||| ||||||||||||| || | | ||||| Sbjct 1372780 TTTCTCAATATTTTTCCGGTACTCATCCAATGTTGTTGCACCGATGCATTGCAATTCACC 1372839 Query 332108 ACGTGAAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAACCATTACTTGCGGAACC 332167 | || | || || || | ||||||| | ||||| ||||| | || || || Sbjct 1372840 TCTTGCCAACGCAGGTTTCAACATATTGGCCGCATCCATCGAACCCGAA---GCAGATCC 1372896 Query 332168 AGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTTAG 332227 || || || | |||| || |||||||| || | ||| |||| | ||| || Sbjct 1372897 GGCTCCGACAAGCGTATGTATCTCATCAATAAATAAGATAATATTCGGATTCTTCGATAA 1372956 Query 332228 TTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCA 332285 ||| || || | | | ||| || |||||||||| ||||| || || || || ||| Sbjct 1372957 TTCATTAAGGATAGCTTTGATTCGCTCTTCAAATTGCCCACGGTATTTCGTTCCGGCA 1373014 >seq126 Length=3533043 Score = 84.2 bits (92), Expect = 5e-11 Identities = 170/249 (68%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 332037 AATGCACTATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACA 332096 || |||| ||||| || ||||| || || |||||||| |||| ||||| || || ||| Sbjct 101449 AAAGCACCGTCTTTTTCTATATTCTTTCGGTATTCATCCAATGTAGTTGCTCCGAT-ACA 101507 Query 332097 C-GAATCTCACCACGTGAAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAACCATT 332155 | || ||||| | || | || || || | ||||||| |||||||| || | Sbjct 101508 TTGTATTTCACCTCTTGCCAAAGCAGGTTTCAACATATTGGCAGCATCCATAGACCCGGT 101567 Query 332156 ACTTGCGGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTC 332215 ||| ||| || || || || |||||||||||||||| || | |||| |||| Sbjct 101568 ---TGCTCCACCTGCTCCGACAATGGTATGAATTTCATCAATAAACAAAATAATATTCGG 101624 Query 332216 ACGTTTCTTTAGTTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGATACTT 332275 | || ||||| || || | | | ||| ||||||||||||| || || || || Sbjct 101625 ATTTTGTGAAAGTTCATTCAGGATAGCTTTGATTCGTTCTTCAAATTGTCCGCGGTATTT 101684 Query 332276 AGTACCAGC 332284 ||| || || Sbjct 101685 AGTTCCGGC 101693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113476594558016