Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_027364.1
Length=348113
Score E
Sequences producing significant alignments: (Bits) Value
seq3436 129 1e-24
seq875 127 5e-24
seq95 98.7 2e-15
seq1535 84.2 5e-11
seq126 84.2 5e-11
>seq3436
Length=2346199
Score = 129 bits (142), Expect = 1e-24
Identities = 213/294 (72%), Gaps = 20/294 (7%)
Strand=Plus/Minus
Query 331998 GTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTCTCGATA 332057
|||||||| |||| || |||| ||||||||| ||||||| |||||| ||||||
Sbjct 1623311 GTCGGCTCTACTAA---AACTTTCTGAAAACGACGTTCCAATGCACCATCTTTTTCGATA 1623255
Query 332058 TTTTTACGATATTCATCATATGTTGTTGCACCAATTACA-CGAATCTCACCACGTGAAAG 332116
||||| | |||||||| ||||| || |||| |||| |||| || || | | |||
Sbjct 1623254 TTTTTCCTGTATTCATCGAGAGTTGTAGCTCCAA-TACATTGAATTTCTCCTCTCGCAAG 1623196
Query 332117 TGCTGGCTTAAGCAT-ATTGCT-CATGTCCATAGAACCATTACTTGCGGAACCAGCCCCA 332174
|| || || ||||| ||||| || |||||||| || | || |||||||| |||
Sbjct 1623195 GGCAGGTTTCAGCATGTTTGCTGCA--TCCATAGATCCGGCA---GCAGAACCAGCACCA 1623141
Query 332175 ACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTT--AGTTCTT 332232
|| ||| |||| || |||||||| ||| || | || || |||| ||| || || |
Sbjct 1623140 ACAATAGTATGTATCTCATCAAT--AAATAAGATTACATTTGGGTTTTTTTGGAGCTCAT 1623083
Query 332233 TTAGCAAATTG-TC-GATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGC 332284
| || ||| | || ||| ||||||||||| | |||||||| ||||| |||||
Sbjct 1623082 TAAG--AATAGATCTGATACGTTCTTCAAACTGTCCACGATATTTAGTGCCAGC 1623031
>seq875
Length=1099013
Score = 127 bits (140), Expect = 5e-24
Identities = 232/328 (71%), Gaps = 19/328 (6%)
Strand=Plus/Plus
Query 331935 ACATTATGGAATTTTTCATACGTTGGTTTCAAACCAT-TAACAATTGCACGAGTT--TCA 331991
||||||||| || ||| ||| ||||||| | | | ||| | |||| | || |||
Sbjct 361425 ACATTATGGTGTTCTTCGTACCTTGGTTTTACATTTTGTAATATCTGCAAGGTTTCTTCA 361484
Query 331992 TCAATTGTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTC 332051
|| | ||||| ||||| | || ||| |||||||| ||||||| ||||||
Sbjct 361485 GCAGTAGTCGGATCAACAAT---AACTTTTTGGAAACGACGTTCCAATGCACCATCTTTT 361541
Query 332052 TCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACAC-GAATCTCACCACG 332110
|| ||||||||||| |||||||| ||||| ||||||| ||||| |||| ||||||||
Sbjct 361542 TCTATATTTTTACGGTATTCATCTAGCGTTGTAGCACCAA-TACACTGAATTTCACCACG 361600
Query 332111 TGAAAGTGCTGGCTTAAGCATATTGCTCA-TGTCCATAGAACCATTACTTGCGGAACCAG 332169
| | ||| || || | |||||| | || ||||||||||| | || || || ||||
Sbjct 361601 AGCTAATGCCGGTTTCAACATATT-CGCAGCATCCATAGAACC-TGAC--GCTGAGCCAG 361656
Query 332170 CCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTT---A 332226
| ||||| || |||| || || |||||||| | ||| |||| | |||||| |
Sbjct 361657 CTCCAACGATTGTATGTATCTCGTCAATGAACAAGATAATATT---CGGGTTCTTTGAAA 361713
Query 332227 GTTCTTTTAGCAAATTGTCGATGCGTTC 332254
|||| ||||| | | | ||| |||||
Sbjct 361714 GTTCATTTAGAATAGCCTTGATTCGTTC 361741
>seq95
Length=1800565
Score = 98.7 bits (108), Expect = 2e-15
Identities = 293/440 (67%), Gaps = 24/440 (5%)
Strand=Plus/Plus
Query 332001 GGCTCAACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTCTCGATATTT 332060
|| ||||| || || | |||| |||||||| | ||| || |||||| || | | |
Sbjct 1538849 GGTTCAACCACATCCACTTTCTGGAAACGACGCGATAAGGCGTGATCTTTATCAAAAATA 1538908
Query 332061 TTACGATATTCATCATATGTTGTTGCACCAATTACACGAATCTCACCACGTGAAAGTGCT 332120
||||||||| | | |||| || | || | ||| || | ||||| ||| |||
Sbjct 1538909 CCACGATATTCTTTAAATGTGGTAGAGCCTACACAACGGATTTGACCACTGCTAAGGGCT 1538968
Query 332121 GGCTTAAGCATATTGCTCATG--TCCATAGAACC---ATTACTTGCGGAACCAGCCCCAA 332175
|| || | | ||| | | | ||||||| ||| | || | ||| || || || |
Sbjct 1538969 GGTTTTAATAAATT--TGAAGCATCCATAGCACCGCCAGTAGTAGCG---CCTGCACCGA 1539023
Query 332176 CCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTTAGTTCTTTTA 332235
|| |||| ||||||||||| || | ||| | ||| ||| || ||||| |||||||
Sbjct 1539024 TAATGGTATGTATTTCATCAATAAATAAAATCGCATTGGTACGCTTTTTTAGGTCTTTTA 1539083
Query 332236 GCAAATTG--TCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCAGTCAATGC 332293
||| | | | ||||| ||||| |||||||| || || ||||| || || ||
Sbjct 1539084 --AAACGGCTTTAAAGCGTTTCTCAAAATCACCACGGTATTTGGTACCTGCCAATAAAGC 1539141
Query 332294 ACCAACATTTAGTGAAAGAATTTCAACG---TCTTTCAGGTGTTCAGGTACGTTACCATC 332350
|||| || || ||| ||| |||| ||||| | |||| ||||| | |||||
Sbjct 1539142 GCCAAGATCAAGGGAATAAAT---AACGCTATCTTTTAATAGTTCTGGTACTTGCCCATC 1539198
Query 332351 AGCAATA-GCTTGTGCAAGCCCGTCGATGATTTGTGTTTTACCTACACCAGCTTCACC-A 332408
| ||||| |||| ||| || || || | || |||||||| || || || ||||| |
Sbjct 1539199 AACAATACGCTT-TGCTAGACCTTCCACAATAGCCGTTTTACCAACGCCTGCCTCACCTA 1539257
Query 332409 GTGAGAATAGCATTCTTTTT 332428
| || | || ||| |||||
Sbjct 1539258 CTAAG-AGAGGATTATTTTT 1539276
>seq1535
Length=1988416
Score = 84.2 bits (92), Expect = 5e-11
Identities = 199/298 (67%), Gaps = 6/298 (2%)
Strand=Plus/Plus
Query 331988 TTCATCAATTGTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATC 332047
|||| | ||||||| ||||| | ||| ||| ||||||||| || || | ||
Sbjct 1372723 TTCAGCGGTTGTCGGATCAACAA--TCACCTTTTG-AAAACGACGTTCCAAAGCTCCGTC 1372779
Query 332048 TTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACACGAATCTCACC 332107
|||||| |||||||| || || ||||| ||||||||||||| || | | |||||
Sbjct 1372780 TTTCTCAATATTTTTCCGGTACTCATCCAATGTTGTTGCACCGATGCATTGCAATTCACC 1372839
Query 332108 ACGTGAAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAACCATTACTTGCGGAACC 332167
| || | || || || | ||||||| | ||||| ||||| | || || ||
Sbjct 1372840 TCTTGCCAACGCAGGTTTCAACATATTGGCCGCATCCATCGAACCCGAA---GCAGATCC 1372896
Query 332168 AGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTTAG 332227
|| || || | |||| || |||||||| || | ||| |||| | ||| ||
Sbjct 1372897 GGCTCCGACAAGCGTATGTATCTCATCAATAAATAAGATAATATTCGGATTCTTCGATAA 1372956
Query 332228 TTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCA 332285
||| || || | | | ||| || |||||||||| ||||| || || || || |||
Sbjct 1372957 TTCATTAAGGATAGCTTTGATTCGCTCTTCAAATTGCCCACGGTATTTCGTTCCGGCA 1373014
>seq126
Length=3533043
Score = 84.2 bits (92), Expect = 5e-11
Identities = 170/249 (68%), Gaps = 5/249 (2%)
Strand=Plus/Plus
Query 332037 AATGCACTATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACA 332096
|| |||| ||||| || ||||| || || |||||||| |||| ||||| || || |||
Sbjct 101449 AAAGCACCGTCTTTTTCTATATTCTTTCGGTATTCATCCAATGTAGTTGCTCCGAT-ACA 101507
Query 332097 C-GAATCTCACCACGTGAAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAACCATT 332155
| || ||||| | || | || || || | ||||||| |||||||| || |
Sbjct 101508 TTGTATTTCACCTCTTGCCAAAGCAGGTTTCAACATATTGGCAGCATCCATAGACCCGGT 101567
Query 332156 ACTTGCGGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTC 332215
||| ||| || || || || |||||||||||||||| || | |||| ||||
Sbjct 101568 ---TGCTCCACCTGCTCCGACAATGGTATGAATTTCATCAATAAACAAAATAATATTCGG 101624
Query 332216 ACGTTTCTTTAGTTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGATACTT 332275
| || ||||| || || | | | ||| ||||||||||||| || || || ||
Sbjct 101625 ATTTTGTGAAAGTTCATTCAGGATAGCTTTGATTCGTTCTTCAAATTGTCCGCGGTATTT 101684
Query 332276 AGTACCAGC 332284
||| || ||
Sbjct 101685 AGTTCCGGC 101693
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1113476594558016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |