Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq3436 118 2e-21 seq2330 111 3e-19 seq3213 109 1e-18 seq95 102 2e-16 seq179 91.5 3e-13 seq875 86.0 1e-11 >seq3436 Length=2346199 Score = 118 bits (130), Expect = 2e-21 Identities = 186/261 (71%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 48462 TCTGCTGTAACTGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATT 48521 |||| |||| ||||| || ||||| ||||| | || ||||||||||| | |||| Sbjct 1623022 TCTGTTGTA---GCTGGCACTAAATATCGTGGACAGTTTGAAGAACGTATCAGATCTATT 1623078 Query 48522 ATTAAAGAACTTAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATG 48581 |||| || || ||||| ||||||||| || || |||||||| |||||| ||| Sbjct 1623079 CTTAATGAGCTCCAAAAAAACCCAAATGTAATCTTATTTATTGATGAGATACATACTATT 1623138 Query 48582 ATGGGTGCTGGTGGTAGCAGCACTGGATCTATGGATATGAGC-AATATCATGAAACCTGC 48640 | ||||||||| | || | | |||||||||||| ||| || || |||||||||| Sbjct 1623139 GTTGGTGCTGGTTCT-GCTG--CCGGATCTATGGAT-GCAGCAAACATGCTGAAACCTGC 1623194 Query 48641 ACTTTCACGTGGTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAA 48700 ||| | | || || |||| ||| || || |||||| || ||||| | | || Sbjct 1623195 CCTTGCGAGAGGAGAAATTCAATGTATTGGAGCTACAACTCTCGATGAATACAGGAAAAA 1623254 Query 48701 CATTGAAAAAGATGCTGCATT 48721 || |||||||||| |||||| Sbjct 1623255 TATCGAAAAAGATGGTGCATT 1623275 >seq2330 Length=1066040 Score = 111 bits (122), Expect = 3e-19 Identities = 174/242 (72%), Gaps = 9/242 (4%) Strand=Plus/Minus Query 48474 GCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACTT 48533 || || ||||||||||||||| |||| ||||||||||| ||| || | || ||| | Sbjct 194598 GCAGGAACAAAATACCGTGGTCAATTTGAAGAACGTATTAAAGCGATATTGAACGAATTG 194539 Query 48534 A--AAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTG 48591 |||||| ||| || ||| |||| || || || |||||| || | || || | Sbjct 194538 TCTAAAAACCCGAACATT--ATTCTGTTTATAGACGAGATACATACCATAGTAGGCGCAG 194481 Query 48592 GTGGTAGCAGCACTGGATCTATGGATATGAGCAAT-ATCATGAAACCTGCACTTTCACGT 48650 ||||| ||| || ||||| ||||| ||||| || ||||||| || | | ||| Sbjct 194480 GTGGT-GCAACA--GGATCACTGGATGC-AGCAAACATGCTGAAACCGGCTTTGGCTCGT 194425 Query 48651 GGTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTGAAAAA 48710 ||||| || | ||||||||||||||| || ||||||||| | |||||||||||| Sbjct 194424 GGTGAAATACAATGTATCGGTGCAACAACACTCGATGAATATCGCAAAAACATTGAAAAA 194365 Query 48711 GA 48712 || Sbjct 194364 GA 194363 >seq3213 Length=2170589 Score = 109 bits (120), Expect = 1e-18 Identities = 251/375 (67%), Gaps = 20/375 (5%) Strand=Plus/Plus Query 49170 GGTGCTTTCATGTTTGTTGGACCATCTGGTACTGGTAAAACTGAAATCACAAAAGCACTT 49229 ||| ||||| | || |||| || | || |||||||| ||| || ||||||||||| Sbjct 1170593 GGTACTTTCTTATTCCTTGGCCCGACGGGGGTAGGTAAAACCGAACTCGCAAAAGCACTT 1170652 Query 49230 GCTGAAGCAATGGGTTC-----TGAG------CTAATTCGTTTTGATATGTCAGAGTTTT 49278 || ||| ||| ||| ||| || ||| | |||||||| || | | Sbjct 1170653 GCAGAATTTATG--TTCAATGATGAAGACTCTCTTATTAGAATTGATATGAGTGAATATA 1170710 Query 49279 CGCAAGACCACACTGTATCTAAACTTATTGGTTCACCTCCTGGATATGTAGGACATGAAA 49338 | || | || | ||| | ||| ||||| | |||||||||||||| ||| ||||| Sbjct 1170711 TGGAAAAACATAATGTTGCACGACTGGTTGGTGCTCCTCCTGGATATGTGGGATATGAAG 1170770 Query 49339 CAGGAAATGGTCAGCTTCTTGATAAAGTTGAACAATTCCCTAATGCAGTACTTCTACTGG 49398 ||| ||||| | || ||| || ||| || ||||| |||| | | Sbjct 1170771 AAGGC---GGTCAATTGACCGAAGCAGTCAGACGCAAGCCTTATTCAGTAATTCTTTTTG 1170827 Query 49399 ATGAAATTGAAAAAGCACATCCAAAAGTACTGCTGACATTC--CTACAAGTATTGGATGA 49456 |||||||||| ||||| ||||| | || | | | ||| || ||| | || ||||| Sbjct 1170828 ATGAAATTGAGAAAGCGCATCCGGATGTTTT--TAATATTATGCTCCAAATCTTTGATGA 1170885 Query 49457 AGGGCGTTTGACTGGTTCACAAGGAAAAACAGTTTACTTTAATAATATTACTGTTATTAT 49516 ||||||||||||| |||| |||| | ||||||| | ||||| |||| | | | ||||| Sbjct 1170886 TGGGCGTTTGACTGATTCAAAAGGCAGAACAGTTGATTTTAAAAATACTCTTATAATTAT 1170945 Query 49517 GACTACAAACCTTGG 49531 |||| |||| |||| Sbjct 1170946 GACTTCAAATATTGG 1170960 Score = 86.0 bits (94), Expect = 1e-11 Identities = 234/353 (66%), Gaps = 13/353 (4%) Strand=Plus/Plus Query 48473 TGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACT 48532 ||| || ||||||||||||||||| || ||||||||| | || ||||| | ||| | Sbjct 1041909 TGCAGGGACAAAATACCGTGGTGAGTTTGAAGAACGTCTAAAAAAGATTATGGATGAAAT 1041968 Query 48533 TAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTGG 48592 | || || |||| | || | | ||||||||| | || | |||| ||||| || Sbjct 1041969 TCGCCAATCAGGAAATATTATCCTTGTGATTGATGAAATGCACACATTGATTGGTGCAGG 1042028 Query 48593 TGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCACGTGG 48652 | |||| | || | || ||| | |||||| |||||||||| | ||| | || Sbjct 1042029 -AGCGGCAGAA--GGCGCAATTGATGCGGCTAATATCTTGAAACCTGCTTTATCAAGAGG 1042085 Query 48653 TGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACA----TTGAAA 48708 || || | ||||| ||||||||||| | || || || ||||| | | |||| Sbjct 1042086 AGAGATACAAGTTATTGGTGCAACAACATCGGATGAGTA----CAGAAAATATGTAGAAA 1042141 Query 48709 AAGATGCTGCATTTTCCCGCCGCTTCACTAAAATTGAT-GTAGTTGAACCTAGTATTAAC 48767 | ||| ||||||| ||||| ||| | | | || | | |||||| | | || | Sbjct 1042142 AGGATTCTGCATTAGAACGCCGTTTC-CAATCCGTAATAATTGATGAACCAAATGTTGAT 1042200 Query 48768 GAAACACGTGAAATTATTAATGGTCTGAAAGGTACTTATGAAAAATATCATAA 48820 ||| | |||||||| || ||| ||||| | |||||| | | ||||| Sbjct 1042201 GAATCTATCGAAATTATAAAAGGTTTGAAACCAAGATATGAAGATCACCATAA 1042253 >seq95 Length=1800565 Score = 102 bits (112), Expect = 2e-16 Identities = 289/434 (67%), Gaps = 10/434 (2%) Strand=Plus/Minus Query 48330 AAAAAGAATGCTATTCTTACT-GGTGATGCAGGAGTCGGTAAAACTCAGATCGTCGATGG 48388 ||||| ||| || | |||| | ||||| ||||| || |||||||| || || || || Sbjct 1539276 AAAAATAATCCTCT-CTTAGTAGGTGAGGCAGGCGTTGGTAAAACGGCTATTGTGGAAGG 1539218 Query 48389 TTTTGCACAAGCC-ATTGCTGATGGTGACGTACCTGA-CTATCTGAAAGGTGTTGAGGTA 48446 | | ||| |||| |||| |||||| | ||||| || |||| | |||| | | | || Sbjct 1539217 TCTAGCA-AAGCGTATTGTTGATGGGCAAGTACCAGAACTAT-TAAAAGATA--GCGTTA 1539162 Query 48447 TTA--TCTCTTAACGTTTCTGCTGTAACTGCTGGTACAAAATACCGTGGTGAATTCGAAG 48504 || || ||| | || ||| || || ||||| |||||||||||||| || || Sbjct 1539161 TTTATTCCCTTGATCTTGGCGCTTTATTGGCAGGTACCAAATACCGTGGTGATTTTGAGA 1539102 Query 48505 AACGTATGGAAGGTATTATTAAAGAACTTAAAAAACGAGAAAATGTAATTTTGTTCATTG 48564 |||| | ||| || | ||||| || ||||| || |||| ||||| || |||| Sbjct 1539101 AACGCTTTAAAGCCGTTTTAAAAGACCTAAAAAAGCGTACCAATGCGATTTTATTTATTG 1539042 Query 48565 ATGAAGTACATATTATGATGGGTGCTGGTGGTAGCAGCACTGGATCTATGGATATGAGCA 48624 ||||| |||||| || || ||||| || | || | || |||||||| | Sbjct 1539041 ATGAAATACATACCATTATCGGTGCAGGCGCTACTACTGGCGGTGCTATGGATGCTTCAA 1538982 Query 48625 ATATCATGAAACCTGCACTTTCACGTGGTGATATTCGTGTTATCGGTGCAACAACTTATG 48684 || | | ||||| || ||| ||||| | || ||| | | || | || || | | Sbjct 1538981 ATTTATTAAAACCAGCCCTTAGCAGTGGTCAAATCCGTTGTGTAGGCTCTACCACATTTA 1538922 Query 48685 AGGAATATCGCCAGAACATTGAAAAAGATGCTGCATTTTCCCGCCGCTTCACTAAAATTG 48744 | |||||||| | |||| |||||| || || || || || ||| ||| | | Sbjct 1538921 AAGAATATCGTGGTATTTTTGATAAAGATCACGCCTTATCGCGTCGTTTCCAGAAAGTGG 1538862 Query 48745 ATGTAGTTGAACCT 48758 |||| ||||||||| Sbjct 1538861 ATGTGGTTGAACCT 1538848 >seq179 Length=2312354 Score = 91.5 bits (100), Expect = 3e-13 Identities = 164/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 48474 GCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACTT 48533 || |||||||||||| | || |||| |||||| | ||| ||| || || | || || Sbjct 2060602 GCAGGTACAAAATACAGGGGACAATTTGAAGAAAGAATGAAAGCCATAATAGATGAGCTG 2060661 Query 48534 AAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTGGT 48593 | |||| |||| || || || || ||||| |||||| || | || || ||| Sbjct 2060662 ATAAAAGCTACCGATGTTATATTATTTATAGATGAGATACATACAATAGTTGGCGCCGGT 2060721 Query 48594 GGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCACGTGGT 48653 || | | | ||||| ||||| | ||||| | |||||||| || |||| ||| Sbjct 2060722 GGAACGA---CAGGATCACTGGATGCGGCAAATATGCTTAAACCTGCCCTGGCACGCGGT 2060778 Query 48654 GATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTGAAAAAGA 48712 || || | ||| |||||||| || || |||||||| ||||| ||||||||||| Sbjct 2060779 GAAATCCAATGTATAGGTGCAACTACCCTCGATGAATATCGACAGAATATTGAAAAAGA 2060837 >seq875 Length=1099013 Score = 86.0 bits (94), Expect = 1e-11 Identities = 158/222 (71%), Gaps = 11/222 (5%) Strand=Plus/Minus Query 48504 GAACGTATGGAAGGTATTATTAAAGAACTT--AAAAAACGAGAAAATGTAATTTTGTTCA 48561 ||||| || | | |||| | || |||||| ||| ||| ||| || || ||||||| Sbjct 361741 GAACGAATCAAGGCTATTCTAAATGAACTTTCAAAGAACCCGAATATT--ATCTTGTTCA 361684 Query 48562 TTGATGAAGTACATATTATGATGGGTGCTGGTGGTAGCAGCACTGGATCTATGGAT-ATG 48620 |||| || |||||| || | || ||||| ||| || || ||||||||| || Sbjct 361683 TTGACGAGATACATACAATCGTTGGAGCTGG-CTCAGCGTCA--GGTTCTATGGATGCTG 361627 Query 48621 AGCAATATCATGAAACCTGCACTTTCACGTGGTGATATTC-GTGTTATCGGTGCAACAAC 48679 | ||||| ||||||| ||| | | |||||||| |||| ||| ||| ||||| ||||| Sbjct 361626 CG-AATATGTTGAAACCGGCATTAGCTCGTGGTGAAATTCAGTG-TATTGGTGCTACAAC 361569 Query 48680 TTATGAGGAATATCGCCAGAACATTGAAAAAGATGCTGCATT 48721 || ||||| || | || || |||||||||| |||||| Sbjct 361568 GCTAGATGAATACCGTAAAAATATAGAAAAAGATGGTGCATT 361527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108642930447208