Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq2282 111 2e-19 seq1991 111 2e-19 seq2298 102 1e-16 seq373 87.8 3e-12 >seq2282 Length=143344 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 197669 GATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGT 197728 ||| | || || ||||| || | |||||| ||||| | |||||||| |||||||| | Sbjct 11897 GATAGAACCGGTACAGGCACACGTTCTGTGTTTGGTCAGCAGATGCGCTTTGATTTATCT 11838 Query 197729 AAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTG 197788 ||||||||||| ||| | || ||||| ||| | || ||| |||||| |||||||| Sbjct 11837 AAAGGTTTCCCTTTAATGACAACTAAAAAAATGCATCTGAAAAGTATTATTCATGAACTT 11778 Query 197789 CTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCATT 197848 | ||||| | | || ||||| || | || || || ||||||| |||| || || Sbjct 11777 TTATGGTTTATAAAAGGCGATACAAATATTAAGTACCTTCAAGATAATGGCGGTAGAATC 11718 Query 197849 TGGCGGGAGTGGCAAGATGAAAATGGGAA 197877 ||| || ||| ||||||||||| || Sbjct 11717 TGGAATGAATGGGCTGATGAAAATGGTAA 11689 >seq1991 Length=147557 Score = 111 bits (122), Expect = 2e-19 Identities = 189/274 (69%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 197613 TGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTCATGTTAAAGGCGATC 197672 ||||||||||||| || | || ||| || | |||||| || || |||| | Sbjct 6668 TGAAACAATATCTCGATCTTCTGGAGAGAATCAAAGCCGAGGGAGTTGAAAAGAGCGACC 6609 Query 197673 GTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGTAAAG 197732 | || ||||| || ||| | ||| || || | ||||||||| ||||| | | | | Sbjct 6608 GGACAGGAACGGGCACGATCAGTGTTTTCGGGCACCAGATGCGCTTTGACCTCAATGAGG 6549 Query 197733 GTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTGCTGT 197792 |||| || || | || || || ||||| || || || || || || |||||||| |||| Sbjct 6548 GTTTTCCCGTACTGACCACAAAAAAACTGCATCTACGCTCGATCATACATGAACTTCTGT 6489 Query 197793 GGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCATTTGGC 197852 |||| || | || |||||||| | |||||||| | ||||| |||||| || ||| Sbjct 6488 GGTTTCTCAAGGGAGATACCAATATAAAATATCTTCACGATAATAACGTTACGATATGGG 6429 Query 197853 GGGAGTGGCAAGATGAAAATGGGAACCTTGGCCC 197886 |||||| |||| | || ||||| ||||| Sbjct 6428 ACGAGTGGGCGGATGCCGACGGCAACCTGGGCCC 6395 >seq2298 Length=83281 Score = 102 bits (112), Expect = 1e-16 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 197613 TGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTCATGTTAAAGGCGATC 197672 |||||||||||| || | | | | | || |||| | ||| | ||||| | || | Sbjct 73505 TGAAACAATATCAAGATCTTTTACGGCATGTTATGGATAACGGTAACTTTAAAAGTGACC 73446 Query 197673 GTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGTAAAG 197732 |||| ||||| || || ||| || ||| || ||||||||| ||||| | | Sbjct 73445 GTACGGGAACGGGTACAAAAAGTGTATTCGGATATCAAATGCGTTTTAATTTGGAAGAGG 73386 Query 197733 GTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTGCTGT 197792 ||||||| | | ||||| |||||||| || ||| || ||||| |||| |||| | Sbjct 73385 GTTTCCCTGTTTTAACGACAAAGAAACTGCATCTGAAATCGATTATTTATGAGTTGCTAT 73326 Query 197793 GGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCATTTGG 197851 |||| | | || |||||||| | |||||||| ||||| ||||||||| |||||| Sbjct 73325 GGTTTTTAAAGGGTGATACCAATATTAAATATCTAAAAGATCACGGCGTTAGTATTTGG 73267 >seq373 Length=1274844 Score = 87.8 bits (96), Expect = 3e-12 Identities = 201/300 (67%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 197607 TAATTGTGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTCATGTTAAAG 197666 |||| |||||||||||||||| | |||| | ||| ||| | || |||| | Sbjct 928967 TAATGATGAAACAATATCTTGATTTAATGCGTCATGTTCGGGATAACGGAGTATTTAAGG 929026 Query 197667 GCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGAT-TTG 197725 |||||||| ||||| || || | ||| ||||| || ||||| ||| || | | Sbjct 929027 AAGATCGTACAGGAACGGGTACTTATAGTGTATTTGGTTATCAAATGCGCTTTAATCTAG 929086 Query 197726 CGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAA 197785 || | ||||| |||||||| || ||||| ||| ||| || || ||||||||||| Sbjct 929087 CGGATGGGTTT-CCGTTAGTTACCACTAAAAAATGCCATCTTAAGTCGATTATCCATGAG 929145 Query 197786 CTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACC 197845 | ||||||| | || |||||||| | || || |||| || || || | Sbjct 929146 TTATTGTGGTTTTTGCAGGGCGATACCAATATTCGTTACCTTAAAGAAAATGGTGTGAGT 929205 Query 197846 ATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGGTGCACAATGG 197905 |||||| || ||| |||||||| || | | ||||| |||||||| |||||| Sbjct 929206 ATTTGGGATGAATGGGCTGATGAAAACGGTGATTTAGGCCCTGTGTATGGTTATCAATGG 929265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 768955226903360