Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_027402.1
Length=240413
Score E
Sequences producing significant alignments: (Bits) Value
seq2282 111 2e-19
seq1991 111 2e-19
seq2298 102 1e-16
seq373 87.8 3e-12
>seq2282
Length=143344
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 197669 GATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGT 197728
||| | || || ||||| || | |||||| ||||| | |||||||| |||||||| |
Sbjct 11897 GATAGAACCGGTACAGGCACACGTTCTGTGTTTGGTCAGCAGATGCGCTTTGATTTATCT 11838
Query 197729 AAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTG 197788
||||||||||| ||| | || ||||| ||| | || ||| |||||| ||||||||
Sbjct 11837 AAAGGTTTCCCTTTAATGACAACTAAAAAAATGCATCTGAAAAGTATTATTCATGAACTT 11778
Query 197789 CTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCATT 197848
| ||||| | | || ||||| || | || || || ||||||| |||| || ||
Sbjct 11777 TTATGGTTTATAAAAGGCGATACAAATATTAAGTACCTTCAAGATAATGGCGGTAGAATC 11718
Query 197849 TGGCGGGAGTGGCAAGATGAAAATGGGAA 197877
||| || ||| ||||||||||| ||
Sbjct 11717 TGGAATGAATGGGCTGATGAAAATGGTAA 11689
>seq1991
Length=147557
Score = 111 bits (122), Expect = 2e-19
Identities = 189/274 (69%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 197613 TGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTCATGTTAAAGGCGATC 197672
||||||||||||| || | || ||| || | |||||| || || |||| |
Sbjct 6668 TGAAACAATATCTCGATCTTCTGGAGAGAATCAAAGCCGAGGGAGTTGAAAAGAGCGACC 6609
Query 197673 GTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGTAAAG 197732
| || ||||| || ||| | ||| || || | ||||||||| ||||| | | | |
Sbjct 6608 GGACAGGAACGGGCACGATCAGTGTTTTCGGGCACCAGATGCGCTTTGACCTCAATGAGG 6549
Query 197733 GTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTGCTGT 197792
|||| || || | || || || ||||| || || || || || || |||||||| ||||
Sbjct 6548 GTTTTCCCGTACTGACCACAAAAAAACTGCATCTACGCTCGATCATACATGAACTTCTGT 6489
Query 197793 GGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCATTTGGC 197852
|||| || | || |||||||| | |||||||| | ||||| |||||| || |||
Sbjct 6488 GGTTTCTCAAGGGAGATACCAATATAAAATATCTTCACGATAATAACGTTACGATATGGG 6429
Query 197853 GGGAGTGGCAAGATGAAAATGGGAACCTTGGCCC 197886
|||||| |||| | || ||||| |||||
Sbjct 6428 ACGAGTGGGCGGATGCCGACGGCAACCTGGGCCC 6395
>seq2298
Length=83281
Score = 102 bits (112), Expect = 1e-16
Identities = 166/239 (69%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 197613 TGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTCATGTTAAAGGCGATC 197672
|||||||||||| || | | | | | || |||| | ||| | ||||| | || |
Sbjct 73505 TGAAACAATATCAAGATCTTTTACGGCATGTTATGGATAACGGTAACTTTAAAAGTGACC 73446
Query 197673 GTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGTAAAG 197732
|||| ||||| || || ||| || ||| || ||||||||| ||||| | |
Sbjct 73445 GTACGGGAACGGGTACAAAAAGTGTATTCGGATATCAAATGCGTTTTAATTTGGAAGAGG 73386
Query 197733 GTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTGCTGT 197792
||||||| | | ||||| |||||||| || ||| || ||||| |||| |||| |
Sbjct 73385 GTTTCCCTGTTTTAACGACAAAGAAACTGCATCTGAAATCGATTATTTATGAGTTGCTAT 73326
Query 197793 GGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCATTTGG 197851
|||| | | || |||||||| | |||||||| ||||| ||||||||| ||||||
Sbjct 73325 GGTTTTTAAAGGGTGATACCAATATTAAATATCTAAAAGATCACGGCGTTAGTATTTGG 73267
>seq373
Length=1274844
Score = 87.8 bits (96), Expect = 3e-12
Identities = 201/300 (67%), Gaps = 2/300 (1%)
Strand=Plus/Plus
Query 197607 TAATTGTGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTCATGTTAAAG 197666
|||| |||||||||||||||| | |||| | ||| ||| | || |||| |
Sbjct 928967 TAATGATGAAACAATATCTTGATTTAATGCGTCATGTTCGGGATAACGGAGTATTTAAGG 929026
Query 197667 GCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGAT-TTG 197725
|||||||| ||||| || || | ||| ||||| || ||||| ||| || | |
Sbjct 929027 AAGATCGTACAGGAACGGGTACTTATAGTGTATTTGGTTATCAAATGCGCTTTAATCTAG 929086
Query 197726 CGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAA 197785
|| | ||||| |||||||| || ||||| ||| ||| || || |||||||||||
Sbjct 929087 CGGATGGGTTT-CCGTTAGTTACCACTAAAAAATGCCATCTTAAGTCGATTATCCATGAG 929145
Query 197786 CTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACC 197845
| ||||||| | || |||||||| | || || |||| || || || |
Sbjct 929146 TTATTGTGGTTTTTGCAGGGCGATACCAATATTCGTTACCTTAAAGAAAATGGTGTGAGT 929205
Query 197846 ATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGGTGCACAATGG 197905
|||||| || ||| |||||||| || | | ||||| |||||||| ||||||
Sbjct 929206 ATTTGGGATGAATGGGCTGATGAAAACGGTGATTTAGGCCCTGTGTATGGTTATCAATGG 929265
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 768955226903360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |