Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq714 120 2e-22
seq86 107 2e-18
seq495 100 2e-16
>seq714
Length=734366
Score = 120 bits (132), Expect = 2e-22
Identities = 144/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888
|||| ||||| ||||| || | || || ||||| || || || || || |||
Sbjct 47940 GAAAGGCATTTCATATCACACGTACTTGCATTCTTTGCAGCATCAGATGGAATTGTAAAT 47881
Query 43889 GAAAATTTGGTTAGTCGGTTTGCGC-AAGAAGTTCAATTACCAGAAGCACGATGTTTTTA 43947
||||| | || || | || || ||||||| ||| | |||||||| ||||||| ||
Sbjct 47880 GAAAACCTTGT-AGAAAGATTCAGCCAAGAAGTACAAGTCACAGAAGCAAGATGTTTCTA 47822
Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATAC 44007
||| ||||||||||| || |||||| ||||||| |||||||||||||| || ||||||||
Sbjct 47821 TGGCTTTCAAATTGCAATGGAAAATGTTCATTCAGAAATGTACAGTCTACTTATAGATAC 47762
Query 44008 GTACATCAAAGAT 44020
|| || | ||||
Sbjct 47761 ATATATTAGAGAT 47749
Score = 100 bits (110), Expect = 2e-16
Identities = 85/105 (81%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743
||| ||||| || ||||| | ||||| ||||| ||||| || || |||||||||||
Sbjct 55296 AGAGAATCCAAGAAGATTTGTGATTTTTCCTATTCAGTATCAAGATATTTGGCAAATGTA 55237
Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTT 43788
||||||||| | || ||||| ||||||||||||||||| |||||
Sbjct 55236 CAAAAAAGCTGAAGCCTCATTCTGGACAGCAGAAGAAGTAGATTT 55192
>seq86
Length=2766441
Score = 107 bits (118), Expect = 2e-18
Identities = 132/178 (74%), Gaps = 7/178 (4%)
Strand=Plus/Minus
Query 19534 GGGCGCAAA-AGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCA 19592
|||| |||| ||| ||| || || |||||| | |||||| | || || || ||||||
Sbjct 2133270 GGGCCCAAATAGTGGTTTACATATCATAATATTTGATGAAATAGATGCCATTTGTAAGTC 2133211
Query 19593 AAGAGGTTCTGGTGT---AAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTC 19646
|||| |||| || |||| || |||||||||||||| || ||||| || || |
Sbjct 2133210 TCGAGGCTCTGTTGCTGGAAATACAGGTGTACATGACACTGTAGTAAATCAGCTTCTAGC 2133151
Query 19647 AAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGA 19704
|||| | || |||||| | ||||| || || ||| |||| ||||| ||||||||| ||
Sbjct 2133150 AAAAATTGATGGTGTTGAACAACTAAACAACATTCTAGTCATTGGAATGACTAATCGA 2133093
Score = 93.3 bits (102), Expect = 3e-14
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
||||||||||| ||||| ||| |||| || |||||||||||||| |||| |||| |||
Sbjct 2135591 CCCAAAATTGTCAATGGACCTCAAATTTTGGATAAATATGTAGGTGAATCAGAAGCCAAT 2135532
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAA 19527
| | ||||||||||| || || |||||||| |||||
Sbjct 2135531 ATTAGGCGTTTGTTTGCGGAAGCAGAAGAAGAGGAAAAA 2135493
>seq495
Length=1347633
Score = 100 bits (110), Expect = 2e-16
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCG 41273
|||||||||||||| || || | |||||| | || ||||| ||||||| | || |
Sbjct 711512 CCTGGTGAATTTGTCCATACTCTTGGAGATAGTCACATTTATCTTAATCATGTGGAAGCA 711453
Query 41274 TTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCT 41333
|| | | |||| ||| ||| |||||| |||| |||||||| | | ||| || | | |
Sbjct 711452 TTGAAAATACAAGTGAAACGCAAACCTCGACCTTTTCCAACATTGCATATCAAGAGAGAT 711393
Query 41334 GTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTAC 41393
||| ||||||| || |||||| | || ||||||| | ||||||| || |
Sbjct 711392 GTTCAAAACATAGAAGATTTTAAGTTTGAAGATTTTGAATTAGAAAATTACAACCCACAT 711333
Query 41394 CCTAAAATCCACATGGACATGTCTGTAT 41421
|| ||||| | ||||| ||| ||||||
Sbjct 711332 CCAAAAATTGAAATGGAGATGGCTGTAT 711305
Score = 84.2 bits (92), Expect = 2e-11
Identities = 219/333 (66%), Gaps = 6/333 (2%)
Strand=Plus/Minus
Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924
||||||||| ||||| || ||||||||||| | ||| || |||||||| || || |
Sbjct 721998 AGGTGATCTAGGTCCAGTGTATGGATTTCAATGGCGGCACTTTGGAGCTAAGTACAAAGA 721939
Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGAT 40984
||| | | |||||| | | || || |||||||| | |||| || || | ||
Sbjct 721938 TATAAAGACAGATTATTCTGGACAGGGCATTGATCAATTGTTGCGCGTGATTGAAATTAT 721879
Query 40985 TAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACA 41044
|| | | || ||| || ||||| || || | || ||||| ||| || |||
Sbjct 721878 CAAGAACAAGCCTGATGATCGTCGTATTATCATGAGTGCTTGGAATCCAGTTGATATACC 721819
Query 41045 TTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGT---TTGCAATGGTGA 41101
| ||||| | ||||| ||||| | | |||||| || || |||| ||
Sbjct 721818 TAAAATGGCTCTCCCACCATGTCACTGTCTCGTTCAGTTCTATGTAGCAGGCAA---AGA 721762
Query 41102 ACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACAT 41161
|| || || || || || ||| | || | ||| |||||| |||| || || || || |
Sbjct 721761 GCTTTCTTGCCAGTTATACCAACGTTCTGCTGATATGGGATTAGGTGTACCATTCAATGT 721702
Query 41162 AGCGAGTTATGCTCTGCTCACGTATATGATTGC 41194
|| |||||||| || | || | |||| ||||
Sbjct 721701 TGCAAGTTATGCATTGTTAACATGTATGGTTGC 721669
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397335907675960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |