Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq714 120 2e-22 seq86 107 2e-18 seq495 100 2e-16 >seq714 Length=734366 Score = 120 bits (132), Expect = 2e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 |||| ||||| ||||| || | || || ||||| || || || || || ||| Sbjct 47940 GAAAGGCATTTCATATCACACGTACTTGCATTCTTTGCAGCATCAGATGGAATTGTAAAT 47881 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGC-AAGAAGTTCAATTACCAGAAGCACGATGTTTTTA 43947 ||||| | || || | || || ||||||| ||| | |||||||| ||||||| || Sbjct 47880 GAAAACCTTGT-AGAAAGATTCAGCCAAGAAGTACAAGTCACAGAAGCAAGATGTTTCTA 47822 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATAC 44007 ||| ||||||||||| || |||||| ||||||| |||||||||||||| || |||||||| Sbjct 47821 TGGCTTTCAAATTGCAATGGAAAATGTTCATTCAGAAATGTACAGTCTACTTATAGATAC 47762 Query 44008 GTACATCAAAGAT 44020 || || | |||| Sbjct 47761 ATATATTAGAGAT 47749 Score = 100 bits (110), Expect = 2e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 ||| ||||| || ||||| | ||||| ||||| ||||| || || ||||||||||| Sbjct 55296 AGAGAATCCAAGAAGATTTGTGATTTTTCCTATTCAGTATCAAGATATTTGGCAAATGTA 55237 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTT 43788 ||||||||| | || ||||| ||||||||||||||||| ||||| Sbjct 55236 CAAAAAAGCTGAAGCCTCATTCTGGACAGCAGAAGAAGTAGATTT 55192 >seq86 Length=2766441 Score = 107 bits (118), Expect = 2e-18 Identities = 132/178 (74%), Gaps = 7/178 (4%) Strand=Plus/Minus Query 19534 GGGCGCAAA-AGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCA 19592 |||| |||| ||| ||| || || |||||| | |||||| | || || || |||||| Sbjct 2133270 GGGCCCAAATAGTGGTTTACATATCATAATATTTGATGAAATAGATGCCATTTGTAAGTC 2133211 Query 19593 AAGAGGTTCTGGTGT---AAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTC 19646 |||| |||| || |||| || |||||||||||||| || ||||| || || | Sbjct 2133210 TCGAGGCTCTGTTGCTGGAAATACAGGTGTACATGACACTGTAGTAAATCAGCTTCTAGC 2133151 Query 19647 AAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGA 19704 |||| | || |||||| | ||||| || || ||| |||| ||||| ||||||||| || Sbjct 2133150 AAAAATTGATGGTGTTGAACAACTAAACAACATTCTAGTCATTGGAATGACTAATCGA 2133093 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||||||||| ||||| ||| |||| || |||||||||||||| |||| |||| ||| Sbjct 2135591 CCCAAAATTGTCAATGGACCTCAAATTTTGGATAAATATGTAGGTGAATCAGAAGCCAAT 2135532 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAA 19527 | | ||||||||||| || || |||||||| ||||| Sbjct 2135531 ATTAGGCGTTTGTTTGCGGAAGCAGAAGAAGAGGAAAAA 2135493 >seq495 Length=1347633 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCG 41273 |||||||||||||| || || | |||||| | || ||||| ||||||| | || | Sbjct 711512 CCTGGTGAATTTGTCCATACTCTTGGAGATAGTCACATTTATCTTAATCATGTGGAAGCA 711453 Query 41274 TTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCT 41333 || | | |||| ||| ||| |||||| |||| |||||||| | | ||| || | | | Sbjct 711452 TTGAAAATACAAGTGAAACGCAAACCTCGACCTTTTCCAACATTGCATATCAAGAGAGAT 711393 Query 41334 GTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTAC 41393 ||| ||||||| || |||||| | || ||||||| | ||||||| || | Sbjct 711392 GTTCAAAACATAGAAGATTTTAAGTTTGAAGATTTTGAATTAGAAAATTACAACCCACAT 711333 Query 41394 CCTAAAATCCACATGGACATGTCTGTAT 41421 || ||||| | ||||| ||| |||||| Sbjct 711332 CCAAAAATTGAAATGGAGATGGCTGTAT 711305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 219/333 (66%), Gaps = 6/333 (2%) Strand=Plus/Minus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 ||||||||| ||||| || ||||||||||| | ||| || |||||||| || || | Sbjct 721998 AGGTGATCTAGGTCCAGTGTATGGATTTCAATGGCGGCACTTTGGAGCTAAGTACAAAGA 721939 Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGAT 40984 ||| | | |||||| | | || || |||||||| | |||| || || | || Sbjct 721938 TATAAAGACAGATTATTCTGGACAGGGCATTGATCAATTGTTGCGCGTGATTGAAATTAT 721879 Query 40985 TAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACA 41044 || | | || ||| || ||||| || || | || ||||| ||| || ||| Sbjct 721878 CAAGAACAAGCCTGATGATCGTCGTATTATCATGAGTGCTTGGAATCCAGTTGATATACC 721819 Query 41045 TTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGT---TTGCAATGGTGA 41101 | ||||| | ||||| ||||| | | |||||| || || |||| || Sbjct 721818 TAAAATGGCTCTCCCACCATGTCACTGTCTCGTTCAGTTCTATGTAGCAGGCAA---AGA 721762 Query 41102 ACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACAT 41161 || || || || || || ||| | || | ||| |||||| |||| || || || || | Sbjct 721761 GCTTTCTTGCCAGTTATACCAACGTTCTGCTGATATGGGATTAGGTGTACCATTCAATGT 721702 Query 41162 AGCGAGTTATGCTCTGCTCACGTATATGATTGC 41194 || |||||||| || | || | |||| |||| Sbjct 721701 TGCAAGTTATGCATTGTTAACATGTATGGTTGC 721669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397335907675960