Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq15409 114 2e-20 seq211 104 3e-17 seq1094 98.7 1e-15 >seq15409 Length=3682 Score = 114 bits (126), Expect = 2e-20 Identities = 309/464 (67%), Gaps = 18/464 (4%) Strand=Plus/Minus Query 11387 CGGGCATGGACTCCCAAAATCTTCTTGCGACCTCGCACACTTGGAAGACCCACTTGGATC 11446 |||| ||| || |||||||| || | || | ||| || || ||||| | | | Sbjct 3406 CGGGTATGCACCTGCAAAATCTCCTCCCTGCCCCTTACATCCGGCAGGCCCACATACACC 3347 Query 11447 TTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTG 11506 | ||| ||||| || || ||||| || ||||| | || | |||||| | || || ||| Sbjct 3346 TGGCGGTCAAACCGGCCAGGGCGCAGCAGGGCTTTGTCCAAAATATCCGCCCGGTTGGTG 3287 Query 11507 GCCGCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAAT 11563 || |||| || | || ||| ||| ||| |||||||| |||||||| || | | Sbjct 3286 GCGGCAACCACGATAACGCC---CTCGTTGCCGTCAAAGCCGTCCATCTCCACCAGCAGT 3230 Query 11564 TGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGC 11620 || || | || || || | || || | || | | ||| || || | ||| || Sbjct 3229 TGGTTCAGGGTCTGCTCACGTTCGTCGTG-GCCGCCG--CCAAGGCCCGCGCCGCGCTGG 3173 Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG--GTTGATTTTCGCGGGCGA 11678 ||||||||||||||| || ||||| ||||| ||||| | | || ||| | || Sbjct 3172 CGGCCCACCGCATCAATTTCGTCAATAAAGACGATACAGGGCGCTGTCTTTTTC--GCTT 3115 Query 11679 TTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG 11738 | ||||| | ||| || || | |||| ||||| || ||| ||||||| |||||||| | Sbjct 3114 TGTCAAACAAATCCCGCACGCGGCTGGCGCCCACGCCCACATACATCTCTACAAAGTTGG 3055 Query 11739 CGGCAGAGCACTGGATGAATGGG-ACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGG 11797 | | ||| | | || || ||| || | || ||||| ||| ||||| || ||| Sbjct 3054 AGCCGGAG-ATGGAATAAAAGGGTACGCCCGCCTCGCCCGCACAGGCGCGGGCCAGCAGG 2996 Query 11798 GTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGG 11841 || || || ||||| ||| ||| | || || |||| |||| Sbjct 2995 GTTTTGCCGGTACCCGGCGGGCCCACCAGCAGCACGCCGTGGGG 2952 >seq211 Length=1809889 Score = 104 bits (114), Expect = 3e-17 Identities = 142/193 (74%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 |||||| ||||||||| ||||||||||| ||||| ||||||| || ||||| ||||| Sbjct 922599 TCTTCTTGAGTAGATGTTCGTTGTGTATGGCTCAAAAGATTCATTGTTTCCCAATATTTG 922540 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCC 110815 || ||||| || || ||||| || || | | ||||| ||| |||| ||| | || Sbjct 922539 AGCAGTGGAAGCCGTAGGCATGGGAGCAAGAAGCAAAGA--GTTGCGAACACCATGCTGT 922482 Query 110816 TTGATGCGTTCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACA 110873 || |||| ||| ||| || |||||| | || | | ||||| | || || ||||| Sbjct 922481 GCAATACGTTTCTTCAGATCAGCCCAGTCCCACAGGTCTG-TTGGTGTGACATT-CCACA 922424 Query 110874 TGTCAAACTGAAG 110886 ||||| ||||||| Sbjct 922423 TGTCATACTGAAG 922411 >seq1094 Length=2708314 Score = 98.7 bits (108), Expect = 1e-15 Identities = 254/383 (66%), Gaps = 8/383 (2%) Strand=Plus/Plus Query 11436 CCACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCA 11495 ||| ||| ||| ||| || ||||| |||||||| || | ||| | || || | ||| Sbjct 198423 CCATTTGTATCCGGCGGTCGAAACGTCCCGGGCGTAGCAAGGCTTTGTCCAGACTTTCCG 198482 Query 11496 CGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGG 11555 || || || || |||| || ||| | || | ||| || |||||||| |||| Sbjct 198483 GACGGTTGGTTGCAGCAAGAATCACTACACCTTTGCGCCCGTCGAACCCATCCATTTCGG 198542 Query 11556 TGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCAC--CAGCACT 11613 | || | ||| || | |||||||| | |||||||| | || | ||| | | Sbjct 198543 TCAGGAGTTGGTTCAGGGTTTGTTCACGTTCATCATTACC--GCCTCCCAAGGCGTTATC 198600 Query 11614 GCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG 11673 |||| |||||| | ||||| || ||||||||||||| || || ||| ||||||| Sbjct 198601 ACGTTTCTTGCCAATGGCATCTATTTCATCAATGAAGATGATGCAAGGTGCTTTTTCGCC 198660 Query 11674 GGCGATTTCAAAGAGATCGCGAACCCTTTTG--GCACCCACACCAACAAACATCTCCACA 11731 || | ||| || ||||| | |||| | || |||| ||| |||||||||| ||| Sbjct 198661 AGCCTGCTTAAACAGGTCGCGTA--CTTTGGCTGCTCCCATACCGACAAACATCTGTACA 198718 Query 11732 AAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCG 11791 || | || | || || || || || || | ||| || || | ||| ||||| Sbjct 198719 AACTCTGAACCGGATATAGAGAAAAACGGAACTTTCGCTTCGCCTGCTACGGCACGGGCA 198778 Query 11792 AGGAGGGTCTTTCCCGTACCTGG 11814 | ||||| ||||| || || || Sbjct 198779 ATCAGGGTTTTTCCTGTTCCCGG 198801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627837372883200