Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1094 105 8e-18 seq126 89.7 6e-13 seq211 86.0 7e-12 seq1599 84.2 3e-11 >seq1094 Length=2708314 Score = 105 bits (116), Expect = 8e-18 Identities = 197/283 (70%), Gaps = 10/283 (4%) Strand=Plus/Plus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 || || |||||||| || |||| |||||||| | |||||||| ||||||||||| | Sbjct 198524 TCGAACCCATCCATTTCGGTCAGGAGTTGGTTCAGGGTTTGTTCACGTTCATCATTACC- 198582 Query 9671 GGCATACCAC--CAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728 || | ||| | | |||| ||| || | |||||| || ||||||||||||| || Sbjct 198583 -GCCTCCCAAGGCGTTATCACGTTTCTTGCCAATGGCATCTATTTCATCAATGAAGATGA 198641 Query 9729 TGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTAC--ACGCTTGGCGCCCAC 9786 |||| ||| ||||||| ||| | ||| || || ||||| ||| || |||| Sbjct 198642 TGCAAGGTGCTTTTTCGCCAGCCTGCTTAAACAGGTCGCGTACTTTGGCT--GCTCCCAT 198699 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATT 9845 ||| |||||||||| ||||| | || ||| | || | || || || || || | || Sbjct 198700 ACCGACAAACATCTGTACAAACTCTGAACCGG-ATATAGAGAAAAACGGAACTTTCGCTT 198758 Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || || | ||| ||||| | || || || || || || || Sbjct 198759 CGCCTGCTACGGCACGGGCAATCAGGGTTTTTCCTGTTCCCGG 198801 >seq126 Length=3533043 Score = 89.7 bits (98), Expect = 6e-13 Identities = 244/368 (66%), Gaps = 12/368 (3%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 || || || || || ||||| || || | ||| | | | ||| || || || || || Sbjct 304019 TCGAAACGCCCCGGGCGAAGCAGGGCTTTATCTAAGCTTTCAGGCCGGTTTGTTGCAGCA 303960 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 | | |||| |||| ||| ||| ||||||||||| || |||||||| || || | Sbjct 303959 AGTATTACAACACCTTTTTTCCCATCGAAACCATCCATTTCCGTCAAAAGCTGATTTAAG 303900 Query 9647 GTTTGTTCCCGTTCATCATT---CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9703 |||||||||||||||||||| | || || | || | | || | |||||| | Sbjct 303899 GTTTGTTCCCGTTCATCATTGCCCCCTCCCAAAGCATTATC---CCGCTTCTTTCCGATT 303843 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 | ||| || ||||||||||| | ||| || || || || || || || ||| Sbjct 303842 GTATCTATTTCATCAATGAAAATGATACAAGGAGCTTTCTCATTTGCCTGTTTGAAAAGA 303783 Query 9764 TCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 ||||| ||| ||| || |||| ||| |||||||| | ||||| | | ||| | Sbjct 303782 TCCCG--CACTTTTGCAGCCCCCATACCCACAAACATTTGAACAAATTCCGATCCGG-AT 303726 Query 9822 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 || | || ||| || || || | ||||| || | || ||||| | | ||| || || Sbjct 303725 ATGGAGAAGAAAGGTACTTTTGCCTCACCTGCTACTGCGCGGGCAATTAAAGTTTTTCCT 303666 Query 9881 GTACCTGG 9888 || || || Sbjct 303665 GTTCCCGG 303658 >seq211 Length=1809889 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 105461 GACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATG 105520 ||||||| | ||| ||| |||| || || | ||| |||| ||| | | || | Sbjct 922453 GACTGGGCTGATCTGAAGAAACGTATTGCACAGCATGGTGTTCGCAACTCTTTGCTTCTT 922512 Query 105521 GCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCC 105580 ||||| ||||| || || ||||| || ||||| ||||| || ||||||| ||||| || Sbjct 922513 GCTCCCATGCCTACGGCTTCCACTGCTCAAATATTGGGAAACAATGAATCTTTTGAGCCA 922572 Query 105581 TACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTT 105625 ||||| ||||||||||| |||||| || | ||||| ||| Sbjct 922573 TACACAACGAACATCTACTCAAGAAGAGTTCTGTCCGGAGAATTT 922617 >seq1599 Length=3738065 Score = 84.2 bits (92), Expect = 3e-11 Identities = 220/329 (67%), Gaps = 24/329 (7%) Strand=Plus/Plus Query 9572 CGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTA--TCAAAACCATCCATCTCTG 9629 ||||| || || |||| | ||| | ||| ||| || || ||||| ||||| |||| Sbjct 3256108 CGATTGGTTGCAGCGAGTATAACTACGCCT--TTCTTTCCGTCGAAACCGTCCATTTCTG 3256165 Query 9630 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 9687 ||| ||||| || | |||||||||||||||||||| | || | ||| | | Sbjct 3256166 TCAGGAGTTGATTCAGCGTTTGTTCCCGTTCATCATTACC--GCCTCCCAGTGCGTTATC 3256223 Query 9688 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCG 9747 ||||| ||| || | || ||| |||||||| ||||| | ||| || || || || | Sbjct 3256224 GCGTTTCTTACCAATGGTATCTATCTCATCTATGAAAATGATACAAGGGGCTTTCTCACT 3256283 Query 9748 AGCGACTTCAAAGAGATCCCGTAC--ACGCTTGGCGCCCACACCAACAAACATCTCCACA 9805 || | ||||||||| || || ||| || |||| || |||||||||| ||| Sbjct 3256284 TGCCTGCTTAAAGAGATCGCGGACTTTGGCT--GCTCCCATGCCGACAAACATCTGTACA 3256341 Query 9806 AAGTTTGCGGCGGAACAT----TGG--ATGAAGGGGACATTAGATTCACCCGCAATGGCT 9859 || | |||||| | ||| | ||| || || || | ||||| || | || Sbjct 3256342 AATT------CGGAACCTGATATGGAAAAGAACGGTACTTTTGCCTCACCTGCCACAGCG 3256395 Query 9860 CGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||||||| || ||||| || || || || Sbjct 3256396 CGGGCGATCAGGGTCTTTCCTGTTCCCGG 3256424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583080047478080