Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 105 8e-18
seq126 89.7 6e-13
seq211 86.0 7e-12
seq1599 84.2 3e-11
>seq1094
Length=2708314
Score = 105 bits (116), Expect = 8e-18
Identities = 197/283 (70%), Gaps = 10/283 (4%)
Strand=Plus/Plus
Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670
|| || |||||||| || |||| |||||||| | |||||||| ||||||||||| |
Sbjct 198524 TCGAACCCATCCATTTCGGTCAGGAGTTGGTTCAGGGTTTGTTCACGTTCATCATTACC- 198582
Query 9671 GGCATACCAC--CAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728
|| | ||| | | |||| ||| || | |||||| || ||||||||||||| ||
Sbjct 198583 -GCCTCCCAAGGCGTTATCACGTTTCTTGCCAATGGCATCTATTTCATCAATGAAGATGA 198641
Query 9729 TGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTAC--ACGCTTGGCGCCCAC 9786
|||| ||| ||||||| ||| | ||| || || ||||| ||| || ||||
Sbjct 198642 TGCAAGGTGCTTTTTCGCCAGCCTGCTTAAACAGGTCGCGTACTTTGGCT--GCTCCCAT 198699
Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATT 9845
||| |||||||||| ||||| | || ||| | || | || || || || || | ||
Sbjct 198700 ACCGACAAACATCTGTACAAACTCTGAACCGG-ATATAGAGAAAAACGGAACTTTCGCTT 198758
Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
| || || | ||| ||||| | || || || || || || ||
Sbjct 198759 CGCCTGCTACGGCACGGGCAATCAGGGTTTTTCCTGTTCCCGG 198801
>seq126
Length=3533043
Score = 89.7 bits (98), Expect = 6e-13
Identities = 244/368 (66%), Gaps = 12/368 (3%)
Strand=Plus/Minus
Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586
|| || || || || ||||| || || | ||| | | | ||| || || || || ||
Sbjct 304019 TCGAAACGCCCCGGGCGAAGCAGGGCTTTATCTAAGCTTTCAGGCCGGTTTGTTGCAGCA 303960
Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646
| | |||| |||| ||| ||| ||||||||||| || |||||||| || || |
Sbjct 303959 AGTATTACAACACCTTTTTTCCCATCGAAACCATCCATTTCCGTCAAAAGCTGATTTAAG 303900
Query 9647 GTTTGTTCCCGTTCATCATT---CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9703
|||||||||||||||||||| | || || | || | | || | |||||| |
Sbjct 303899 GTTTGTTCCCGTTCATCATTGCCCCCTCCCAAAGCATTATC---CCGCTTCTTTCCGATT 303843
Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763
| ||| || ||||||||||| | ||| || || || || || || || |||
Sbjct 303842 GTATCTATTTCATCAATGAAAATGATACAAGGAGCTTTCTCATTTGCCTGTTTGAAAAGA 303783
Query 9764 TCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821
||||| ||| ||| || |||| ||| |||||||| | ||||| | | ||| |
Sbjct 303782 TCCCG--CACTTTTGCAGCCCCCATACCCACAAACATTTGAACAAATTCCGATCCGG-AT 303726
Query 9822 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880
|| | || ||| || || || | ||||| || | || ||||| | | ||| || ||
Sbjct 303725 ATGGAGAAGAAAGGTACTTTTGCCTCACCTGCTACTGCGCGGGCAATTAAAGTTTTTCCT 303666
Query 9881 GTACCTGG 9888
|| || ||
Sbjct 303665 GTTCCCGG 303658
>seq211
Length=1809889
Score = 86.0 bits (94), Expect = 7e-12
Identities = 118/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 105461 GACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATG 105520
||||||| | ||| ||| |||| || || | ||| |||| ||| | | || |
Sbjct 922453 GACTGGGCTGATCTGAAGAAACGTATTGCACAGCATGGTGTTCGCAACTCTTTGCTTCTT 922512
Query 105521 GCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCC 105580
||||| ||||| || || ||||| || ||||| ||||| || ||||||| ||||| ||
Sbjct 922513 GCTCCCATGCCTACGGCTTCCACTGCTCAAATATTGGGAAACAATGAATCTTTTGAGCCA 922572
Query 105581 TACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTT 105625
||||| ||||||||||| |||||| || | ||||| |||
Sbjct 922573 TACACAACGAACATCTACTCAAGAAGAGTTCTGTCCGGAGAATTT 922617
>seq1599
Length=3738065
Score = 84.2 bits (92), Expect = 3e-11
Identities = 220/329 (67%), Gaps = 24/329 (7%)
Strand=Plus/Plus
Query 9572 CGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTA--TCAAAACCATCCATCTCTG 9629
||||| || || |||| | ||| | ||| ||| || || ||||| ||||| ||||
Sbjct 3256108 CGATTGGTTGCAGCGAGTATAACTACGCCT--TTCTTTCCGTCGAAACCGTCCATTTCTG 3256165
Query 9630 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 9687
||| ||||| || | |||||||||||||||||||| | || | ||| | |
Sbjct 3256166 TCAGGAGTTGATTCAGCGTTTGTTCCCGTTCATCATTACC--GCCTCCCAGTGCGTTATC 3256223
Query 9688 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCG 9747
||||| ||| || | || ||| |||||||| ||||| | ||| || || || || |
Sbjct 3256224 GCGTTTCTTACCAATGGTATCTATCTCATCTATGAAAATGATACAAGGGGCTTTCTCACT 3256283
Query 9748 AGCGACTTCAAAGAGATCCCGTAC--ACGCTTGGCGCCCACACCAACAAACATCTCCACA 9805
|| | ||||||||| || || ||| || |||| || |||||||||| |||
Sbjct 3256284 TGCCTGCTTAAAGAGATCGCGGACTTTGGCT--GCTCCCATGCCGACAAACATCTGTACA 3256341
Query 9806 AAGTTTGCGGCGGAACAT----TGG--ATGAAGGGGACATTAGATTCACCCGCAATGGCT 9859
|| | |||||| | ||| | ||| || || || | ||||| || | ||
Sbjct 3256342 AATT------CGGAACCTGATATGGAAAAGAACGGTACTTTTGCCTCACCTGCCACAGCG 3256395
Query 9860 CGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
||||||| || ||||| || || || ||
Sbjct 3256396 CGGGCGATCAGGGTCTTTCCTGTTCCCGG 3256424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583080047478080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |